Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 2-284 |
| Cow position: | chr10:15818205-15817921 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 10 |
| Conread position: | 4-273 |
| Cow position: | chr10:11217201-11217478 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 4-273 |
| Cow position: | chr10:35905242-35904960 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 4-276 |
| Cow position: | chr10:54730612-54730882 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 211, 100 |
| Conread position: | 4-279 |
| Cow position: | chr10:61588671-61588393 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 123 |
| Conread position: | 4-281 |
| Cow position: | chr10:41736895-41737177 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 7 |
| Conread position: | 4-283 |
| Cow position: | chr10:18041767-18042058 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 276 |
| Conread position: | 4-283 |
| Cow position: | chr10:22321117-22321395 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 19 |
| Conread position: | 4-283 |
| Cow position: | chr10:50200292-50200585 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 226 |
| Conread position: | 4-283 |
| Cow position: | chr10:54948533-54948264 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 144 |
| Conread position: | 4-286 |
| Cow position: | chr10:63496326-63496037 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 202, 22 |
| Conread position: | 4-289 |
| Cow position: | chr10:32093381-32093682 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 148, 104 |
| Conread position: | 5-262 |
| Cow position: | chr10:19894988-19895252 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 5-277 |
| Cow position: | chr10:38943844-38944125 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 5-278 |
| Cow position: | chr10:19104593-19104305 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 280 |
| Conread position: | 5-283 |
| Cow position: | chr10:51305914-51306203 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 161 |
| Conread position: | 6-271 |
| Cow position: | chr10:14976212-14975932 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 209 |
| Conread position: | 6-283 |
| Cow position: | chr10:35862639-35862354 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 10-286 |
| Cow position: | chr10:37529016-37528729 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 281 |
| Conread position: | 12-283 |
| Cow position: | chr10:24870760-24871036 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 260 |
| Conread position: | 17-273 |
| Cow position: | chr10:14849836-14850090 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 100 |
| Conread position: | 18-283 |
| Cow position: | chr10:52569197-52569465 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 171 |
| Conread position: | 24-253 |
| Cow position: | chr10:40256143-40256370 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 142 |
| Conread position: | 24-253 |
| Cow position: | chr10:40270222-40270450 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 141 |
| Conread position: | 25-286 |
| Cow position: | chr10:30568085-30567812 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 34-273 |
| Cow position: | chr10:59675634-59675386 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 180, 130 |
| Conread position: | 40-262 |
| Cow position: | chr10:35753338-35753103 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 52-281 |
| Cow position: | chr10:27717202-27716968 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 114 |
| Conread position: | 60-274 |
| Cow position: | chr10:32647750-32647966 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 55 |
| Conread position: | 66-275 |
| Cow position: | chr10:6235773-6235561 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 157, 148 |
| Conread position: | 73-272 |
| Cow position: | chr10:39939772-39939568 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 141, 109 |
| Conread position: | 79-276 |
| Cow position: | chr10:42636894-42637087 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 84-277 |
| Cow position: | chr10:34430544-34430351 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 94-289 |
| Cow position: | chr10:19402616-19402814 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 120, 5 |
| Conread position: | 104-262 |
| Cow position: | chr10:15462185-15462343 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 112 |
| Conread position: | 111-274 |
| Cow position: | chr10:47165573-47165736 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 103, 62 |
| Conread position: | 111-283 |
| Cow position: | chr10:35767383-35767211 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 156 |
| Conread position: | 112-272 |
| Cow position: | chr10:19094344-19094510 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 125-283 |
| Cow position: | chr10:34554379-34554216 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 89, 150 |
| Conread position: | 125-283 |
| Cow position: | chr10:58935480-58935321 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 126-286 |
| Cow position: | chr10:49169346-49169177 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 127-283 |
| Cow position: | chr10:60032864-60032702 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 128-274 |
| Cow position: | chr10:22048962-22049121 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 128-283 |
| Cow position: | chr10:23912784-23912624 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 146 |
| Conread position: | 134-283 |
| Cow position: | chr10:61305000-61305152 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 136-283 |
| Cow position: | chr10:39646384-39646232 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 140 |
| Conread position: | 142-283 |
| Cow position: | chr10:63276117-63276263 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 131 |
Show alignments to all cow chromosomes.