Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-283 |
| Cow position: | chr11:17113036-17112751 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 2-283 |
| Cow position: | chr11:40819051-40818761 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 4-262 |
| Cow position: | chr11:68571078-68570814 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 204 |
| Conread position: | 4-266 |
| Cow position: | chr11:58399864-58400126 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 68 |
| Conread position: | 4-273 |
| Cow position: | chr11:7873755-7874018 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 206 |
| Conread position: | 4-273 |
| Cow position: | chr11:32043889-32043614 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 210, 99 |
| Conread position: | 4-273 |
| Cow position: | chr11:49679549-49679270 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 203, 33 |
| Conread position: | 4-274 |
| Cow position: | chr11:17860560-17860283 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-283 |
| Cow position: | chr11:22103356-22103633 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 160 |
| Conread position: | 4-283 |
| Cow position: | chr11:32067436-32067160 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 7 |
| Conread position: | 4-283 |
| Cow position: | chr11:61454941-61454650 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-283 |
| Cow position: | chr11:84774711-84774987 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 159 |
| Conread position: | 4-286 |
| Cow position: | chr11:23138477-23138177 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 34 |
| Conread position: | 5-283 |
| Cow position: | chr11:42017031-42016756 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 6-295 |
| Cow position: | chr11:23250156-23250444 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 87 |
| Conread position: | 14-276 |
| Cow position: | chr11:55117077-55117349 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 100 |
| Conread position: | 17-273 |
| Cow position: | chr11:26551025-26551288 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 17-274 |
| Cow position: | chr11:81605244-81605499 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 31-270 |
| Cow position: | chr11:61195296-61195554 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 37-283 |
| Cow position: | chr11:10094969-10095224 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 244 |
| Conread position: | 45-281 |
| Cow position: | chr11:53130450-53130686 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 169, 72 |
| Conread position: | 60-283 |
| Cow position: | chr11:81614979-81614760 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 154, 66 |
| Conread position: | 70-283 |
| Cow position: | chr11:63065318-63065536 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 144, 32 |
| Conread position: | 72-275 |
| Cow position: | chr11:22978201-22977992 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 100 |
| Conread position: | 73-283 |
| Cow position: | chr11:46451281-46451490 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 143, 94 |
| Conread position: | 92-283 |
| Cow position: | chr11:9837419-9837223 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 39, 183 |
| Conread position: | 100-276 |
| Cow position: | chr11:71868914-71868735 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 125-262 |
| Cow position: | chr11:19508011-19508155 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 125-274 |
| Cow position: | chr11:18484445-18484293 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 125-275 |
| Cow position: | chr11:63920573-63920414 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 127-273 |
| Cow position: | chr11:18244225-18244068 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 127-283 |
| Cow position: | chr11:63518730-63518889 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 147 |
| Conread position: | 130-281 |
| Cow position: | chr11:62155350-62155501 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 133-283 |
| Cow position: | chr11:75748158-75748311 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 136-283 |
| Cow position: | chr11:17227914-17227769 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 142-286 |
| Cow position: | chr11:34032464-34032320 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 150-267 |
| Cow position: | chr11:15896949-15896829 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 153-283 |
| Cow position: | chr11:45872576-45872440 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 121 |
Show alignments to all cow chromosomes.