Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-272 |
| Cow position: | chr16:49169770-49169498 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 119 |
| Conread position: | 1-276 |
| Cow position: | chr16:4399334-4399617 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 57 |
| Conread position: | 2-274 |
| Cow position: | chr16:23872041-23871759 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 8 |
| Conread position: | 2-283 |
| Cow position: | chr16:30939352-30939628 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 2-283 |
| Cow position: | chr16:48087259-48086973 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 29 |
| Conread position: | 4-275 |
| Cow position: | chr16:47626579-47626293 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 125, 170 |
| Conread position: | 4-277 |
| Cow position: | chr16:7702142-7702427 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 7 |
| Conread position: | 4-283 |
| Cow position: | chr16:11100182-11099900 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 23 |
| Conread position: | 4-283 |
| Cow position: | chr16:16096358-16096631 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 97 |
| Conread position: | 4-283 |
| Cow position: | chr16:25965121-25965398 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 113 |
| Conread position: | 4-286 |
| Cow position: | chr16:17665252-17665537 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 210, 12 |
| Conread position: | 4-286 |
| Cow position: | chr16:43804112-43804397 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 4-286 |
| Cow position: | chr16:49125908-49125629 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 160 |
| Conread position: | 5-244 |
| Cow position: | chr16:7498682-7498923 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 159 |
| Conread position: | 5-273 |
| Cow position: | chr16:52527373-52527647 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 7-259 |
| Cow position: | chr16:51710516-51710254 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 14-283 |
| Cow position: | chr16:9497647-9497381 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 29 |
| Conread position: | 18-276 |
| Cow position: | chr16:9948412-9948686 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 18-283 |
| Cow position: | chr16:32132160-32132420 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 60 |
| Conread position: | 23-282 |
| Cow position: | chr16:44973120-44973389 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 25-271 |
| Cow position: | chr16:14570604-14570861 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 31-286 |
| Cow position: | chr16:14754690-14754423 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 32-287 |
| Cow position: | chr16:35757857-35758112 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 170, 85 |
| Conread position: | 51-286 |
| Cow position: | chr16:13791164-13791417 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 247 |
| Conread position: | 53-273 |
| Cow position: | chr16:4293376-4293604 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 165, 53 |
| Conread position: | 54-283 |
| Cow position: | chr16:11775385-11775154 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 56-286 |
| Cow position: | chr16:23472407-23472647 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 234 |
| Conread position: | 59-273 |
| Cow position: | chr16:15762496-15762271 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 65-259 |
| Cow position: | chr16:48956479-48956669 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 71-261 |
| Cow position: | chr16:5845348-5845546 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 79-272 |
| Cow position: | chr16:28833529-28833726 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 140, 136 |
| Conread position: | 97-283 |
| Cow position: | chr16:35343770-35343575 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 117, 91 |
| Conread position: | 103-275 |
| Cow position: | chr16:51869349-51869530 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 103-286 |
| Cow position: | chr16:7997903-7997714 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 106-273 |
| Cow position: | chr16:12907104-12906930 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 108-283 |
| Cow position: | chr16:3246476-3246310 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 125-272 |
| Cow position: | chr16:5740988-5741131 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 125-283 |
| Cow position: | chr16:11619487-11619645 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 142 |
| Conread position: | 127-281 |
| Cow position: | chr16:52889675-52889515 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 150 |
| Conread position: | 127-283 |
| Cow position: | chr16:8522653-8522498 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 88 |
| Conread position: | 127-283 |
| Cow position: | chr16:24672624-24672460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 131-274 |
| Cow position: | chr16:16231822-16231974 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 131-283 |
| Cow position: | chr16:22868438-22868278 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 133-283 |
| Cow position: | chr16:14242116-14242266 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 134-273 |
| Cow position: | chr16:4902344-4902477 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 149-283 |
| Cow position: | chr16:47336487-47336626 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 153-283 |
| Cow position: | chr16:45046389-45046524 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 123 |
Show alignments to all cow chromosomes.