Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-283 |
| Cow position: | chr17:28539693-28539965 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 167, 95 |
| Conread position: | 4-237 |
| Cow position: | chr17:2034204-2034431 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 225, 34 |
| Conread position: | 4-262 |
| Cow position: | chr17:12289766-12289497 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 4-272 |
| Cow position: | chr17:34595591-34595872 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 4-273 |
| Cow position: | chr17:26514368-26514648 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 4-276 |
| Cow position: | chr17:3386950-3387214 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 113 |
| Conread position: | 4-276 |
| Cow position: | chr17:15985012-15985282 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 210, 94 |
| Conread position: | 4-277 |
| Cow position: | chr17:11056724-11056438 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 4-283 |
| Cow position: | chr17:20358532-20358811 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 34 |
| Conread position: | 4-284 |
| Cow position: | chr17:17221998-17222283 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 84 |
| Conread position: | 4-286 |
| Cow position: | chr17:20033259-20032971 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 18 |
| Conread position: | 4-286 |
| Cow position: | chr17:42419391-42419664 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 76, 122 |
| Conread position: | 4-289 |
| Cow position: | chr17:11216226-11215948 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 5-279 |
| Cow position: | chr17:18569241-18568983 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 6-273 |
| Cow position: | chr17:26771699-26771428 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 16-275 |
| Cow position: | chr17:9564975-9565240 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 72 |
| Conread position: | 32-262 |
| Cow position: | chr17:1061377-1061141 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 182, 69 |
| Conread position: | 46-283 |
| Cow position: | chr17:1783909-1783668 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 168, 14 |
| Conread position: | 47-278 |
| Cow position: | chr17:40312428-40312660 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 47-286 |
| Cow position: | chr17:1295875-1295629 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 227 |
| Conread position: | 52-280 |
| Cow position: | chr17:15664370-15664603 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 215 |
| Conread position: | 74-280 |
| Cow position: | chr17:12054444-12054655 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 140, 5 |
| Conread position: | 106-286 |
| Cow position: | chr17:24876893-24877083 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 184 |
| Conread position: | 116-280 |
| Cow position: | chr17:14848757-14848591 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 125-283 |
| Cow position: | chr17:9778025-9778183 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 145 |
| Conread position: | 127-272 |
| Cow position: | chr17:36533437-36533585 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 127-283 |
| Cow position: | chr17:7697832-7697993 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 132-283 |
| Cow position: | chr17:11281326-11281171 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 134-283 |
| Cow position: | chr17:33052646-33052795 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 137 |
Show alignments to all cow chromosomes.