Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-272 |
| Cow position: | chr2:5297349-5297631 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-276 |
| Cow position: | chr2:36318768-36318491 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 151 |
| Conread position: | 1-280 |
| Cow position: | chr2:47783984-47784273 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 185 |
| Conread position: | 2-262 |
| Cow position: | chr2:31783555-31783815 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 125, 136 |
| Conread position: | 2-273 |
| Cow position: | chr2:28637670-28637390 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 35 |
| Conread position: | 3-274 |
| Cow position: | chr2:37120801-37121077 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 142, 108 |
| Conread position: | 4-273 |
| Cow position: | chr2:43473803-43474083 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-274 |
| Cow position: | chr2:21415930-21416196 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 28 |
| Conread position: | 4-276 |
| Cow position: | chr2:778080-777800 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 162 |
| Conread position: | 4-279 |
| Cow position: | chr2:29612182-29612460 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 210, 68 |
| Conread position: | 4-281 |
| Cow position: | chr2:24270837-24271126 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 163 |
| Conread position: | 4-282 |
| Cow position: | chr2:27076321-27076611 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 275 |
| Conread position: | 4-282 |
| Cow position: | chr2:47008740-47008446 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 280 |
| Conread position: | 4-283 |
| Cow position: | chr2:14853937-14854210 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 40 |
| Conread position: | 4-283 |
| Cow position: | chr2:17940672-17940391 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 33 |
| Conread position: | 4-283 |
| Cow position: | chr2:20900855-20900567 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 7 |
| Conread position: | 4-283 |
| Cow position: | chr2:38864445-38864179 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 147 |
| Conread position: | 4-286 |
| Cow position: | chr2:52485375-52485074 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 168 |
| Conread position: | 4-286 |
| Cow position: | chr2:55480637-55480337 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 4-286 |
| Cow position: | chr2:59397446-59397155 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 285 |
| Conread position: | 5-262 |
| Cow position: | chr2:42969711-42969983 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 5-262 |
| Cow position: | chr2:60955996-60956251 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 209, 123 |
| Conread position: | 5-262 |
| Cow position: | chr2:68110128-68109865 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 109 |
| Conread position: | 5-271 |
| Cow position: | chr2:11548770-11548499 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 201, 19 |
| Conread position: | 5-273 |
| Cow position: | chr2:44986712-44986433 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 5-283 |
| Cow position: | chr2:28711361-28711096 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 210, 17 |
| Conread position: | 11-269 |
| Cow position: | chr2:64212934-64212673 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 203, 6 |
| Conread position: | 11-289 |
| Cow position: | chr2:49344335-49344616 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 156, 135 |
| Conread position: | 12-272 |
| Cow position: | chr2:43104981-43105252 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 12-273 |
| Cow position: | chr2:306225-305959 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 151 |
| Conread position: | 13-280 |
| Cow position: | chr2:69251056-69250778 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 153 |
| Conread position: | 17-271 |
| Cow position: | chr2:30141005-30141270 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 24-283 |
| Cow position: | chr2:36007940-36007690 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 184, 93 |
| Conread position: | 31-262 |
| Cow position: | chr2:52344402-52344632 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 37-272 |
| Cow position: | chr2:49157082-49156837 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 169, 51 |
| Conread position: | 45-286 |
| Cow position: | chr2:39567021-39566774 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 169, 69 |
| Conread position: | 47-283 |
| Cow position: | chr2:21407584-21407817 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 167, 70 |
| Conread position: | 52-283 |
| Cow position: | chr2:56351255-56351020 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 162, 90 |
| Conread position: | 54-283 |
| Cow position: | chr2:6883890-6884119 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 160, 128 |
| Conread position: | 56-272 |
| Cow position: | chr2:53574775-53574991 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 6 |
| Conread position: | 65-281 |
| Cow position: | chr2:28302998-28303218 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 92-275 |
| Cow position: | chr2:45554016-45554206 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 103-276 |
| Cow position: | chr2:38886939-38886755 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 112-283 |
| Cow position: | chr2:53430452-53430623 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 115-262 |
| Cow position: | chr2:57939406-57939564 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 121-273 |
| Cow position: | chr2:25283540-25283703 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 125-272 |
| Cow position: | chr2:62685368-62685524 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 125-282 |
| Cow position: | chr2:13354409-13354570 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 149 |
| Conread position: | 131-274 |
| Cow position: | chr2:43123058-43123210 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 134-283 |
| Cow position: | chr2:80178020-80177866 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 80, 142 |
| Conread position: | 154-283 |
| Cow position: | chr2:80963881-80963751 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 10 |
Show alignments to all cow chromosomes.