Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-283 |
| Cow position: | chr21:4399473-4399761 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 124 |
| Conread position: | 2-286 |
| Cow position: | chr21:1510769-1511032 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 212, 8 |
| Conread position: | 3-283 |
| Cow position: | chr21:17282378-17282663 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 271 |
| Conread position: | 4-262 |
| Cow position: | chr21:34391290-34391034 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 80 |
| Conread position: | 4-273 |
| Cow position: | chr21:21170266-21169990 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-276 |
| Cow position: | chr21:20045092-20044819 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 4-276 |
| Cow position: | chr21:21480503-21480224 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 160 |
| Conread position: | 4-277 |
| Cow position: | chr21:13954188-13954473 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 13 |
| Conread position: | 4-277 |
| Cow position: | chr21:29942678-29942962 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 4-278 |
| Cow position: | chr21:20162211-20162494 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 189 |
| Conread position: | 4-283 |
| Cow position: | chr21:4282188-4281913 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 110 |
| Conread position: | 4-283 |
| Cow position: | chr21:13897869-13898143 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 120 |
| Conread position: | 4-283 |
| Cow position: | chr21:31158931-31159221 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 84 |
| Conread position: | 4-286 |
| Cow position: | chr21:39401276-39401557 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 157 |
| Conread position: | 4-303 |
| Cow position: | chr21:38917911-38918196 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 5-262 |
| Cow position: | chr21:30232023-30231757 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 5-273 |
| Cow position: | chr21:3782777-3783056 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 5-273 |
| Cow position: | chr21:19766530-19766806 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 5-273 |
| Cow position: | chr21:42558781-42559049 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 212, 181 |
| Conread position: | 5-276 |
| Cow position: | chr21:13300828-13301106 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 161 |
| Conread position: | 6-272 |
| Cow position: | chr21:18289342-18289615 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 6 |
| Conread position: | 10-307 |
| Cow position: | chr21:20549235-20548929 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 27 |
| Conread position: | 11-273 |
| Cow position: | chr21:46132312-46132026 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 14-293 |
| Cow position: | chr21:13128410-13128122 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 65, 157 |
| Conread position: | 17-289 |
| Cow position: | chr21:18850537-18850261 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 100, 245 |
| Conread position: | 18-276 |
| Cow position: | chr21:426482-426747 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 115 |
| Conread position: | 18-283 |
| Cow position: | chr21:44007-44260 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 67, 92 |
| Conread position: | 18-283 |
| Cow position: | chr21:6765012-6764738 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 196, 160 |
| Conread position: | 19-276 |
| Cow position: | chr21:5153307-5153572 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 24-276 |
| Cow position: | chr21:18712982-18713238 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 111 |
| Conread position: | 37-272 |
| Cow position: | chr21:11639730-11639973 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 167, 36 |
| Conread position: | 41-283 |
| Cow position: | chr21:43357548-43357300 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 83, 125 |
| Conread position: | 46-262 |
| Cow position: | chr21:29954709-29954496 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 49-286 |
| Cow position: | chr21:33562735-33562977 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 101 |
| Conread position: | 55-272 |
| Cow position: | chr21:25282060-25281844 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 163, 35 |
| Conread position: | 58-271 |
| Cow position: | chr21:36857359-36857577 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 76 |
| Conread position: | 65-283 |
| Cow position: | chr21:36819486-36819251 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 73-283 |
| Cow position: | chr21:49700292-49700076 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 7, 203 |
| Conread position: | 97-283 |
| Cow position: | chr21:28919854-28919659 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 110-283 |
| Cow position: | chr21:31676284-31676457 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 129-279 |
| Cow position: | chr21:33791567-33791411 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 133-262 |
| Cow position: | chr21:13585253-13585128 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 151-278 |
| Cow position: | chr21:18790733-18790603 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.