Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-282 |
| Cow position: | chr24:23184453-23184159 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-284 |
| Cow position: | chr24:43363947-43364231 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 2-262 |
| Cow position: | chr24:24250310-24250581 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 2-276 |
| Cow position: | chr24:11006799-11007086 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-283 |
| Cow position: | chr24:28553968-28553677 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 172 |
| Conread position: | 2-294 |
| Cow position: | chr24:29180487-29180769 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 4-272 |
| Cow position: | chr24:35572075-35572351 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 142 |
| Conread position: | 4-272 |
| Cow position: | chr24:36486475-36486194 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 4-273 |
| Cow position: | chr24:6141368-6141096 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 4-273 |
| Cow position: | chr24:35795682-35795414 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 169, 60 |
| Conread position: | 4-274 |
| Cow position: | chr24:33238962-33238683 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-275 |
| Cow position: | chr24:37480715-37480448 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 4-278 |
| Cow position: | chr24:39492886-39493163 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 7 |
| Conread position: | 4-283 |
| Cow position: | chr24:19658133-19658426 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 278 |
| Conread position: | 4-283 |
| Cow position: | chr24:29170564-29170840 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 212, 117 |
| Conread position: | 4-283 |
| Cow position: | chr24:29673108-29673390 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 18 |
| Conread position: | 4-286 |
| Cow position: | chr24:2730991-2730694 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 4-295 |
| Cow position: | chr24:18741982-18741688 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 5-273 |
| Cow position: | chr24:12090891-12091171 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 5-276 |
| Cow position: | chr24:11839768-11840045 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 118 |
| Conread position: | 5-284 |
| Cow position: | chr24:29606472-29606192 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 11-275 |
| Cow position: | chr24:21264911-21264645 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 135 |
| Conread position: | 13-259 |
| Cow position: | chr24:13625887-13626132 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 155, 15 |
| Conread position: | 15-269 |
| Cow position: | chr24:18257471-18257210 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 15-273 |
| Cow position: | chr24:32609237-32609506 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 18-276 |
| Cow position: | chr24:19466331-19466063 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 160 |
| Conread position: | 24-283 |
| Cow position: | chr24:44041398-44041141 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 84 |
| Conread position: | 28-276 |
| Cow position: | chr24:42102981-42103236 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 30-277 |
| Cow position: | chr24:17309489-17309239 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 160, 188 |
| Conread position: | 37-283 |
| Cow position: | chr24:20024227-20024486 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 42-289 |
| Cow position: | chr24:33944019-33944282 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 76, 243 |
| Conread position: | 46-273 |
| Cow position: | chr24:11874994-11874769 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 168, 69 |
| Conread position: | 59-275 |
| Cow position: | chr24:20225380-20225607 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 89-283 |
| Cow position: | chr24:34315032-34315224 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 103-290 |
| Cow position: | chr24:15861910-15861721 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 34 |
| Conread position: | 111-274 |
| Cow position: | chr24:28600918-28600751 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 91 |
| Conread position: | 126-273 |
| Cow position: | chr24:14729119-14729262 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 128-289 |
| Cow position: | chr24:28699769-28699936 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 158 |
| Conread position: | 130-267 |
| Cow position: | chr24:35073806-35073950 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.