Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-275 |
| Cow position: | chr3:44254850-44254559 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 170 |
| Conread position: | 1-276 |
| Cow position: | chr3:48530225-48530505 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 13 |
| Conread position: | 2-270 |
| Cow position: | chr3:61191329-61191062 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 34 |
| Conread position: | 4-273 |
| Cow position: | chr3:28675578-28675854 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 4-273 |
| Cow position: | chr3:49454821-49455102 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 4-274 |
| Cow position: | chr3:8148074-8147803 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 4-274 |
| Cow position: | chr3:59588108-59588385 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-274 |
| Cow position: | chr3:62321557-62321268 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 84, 169 |
| Conread position: | 4-274 |
| Cow position: | chr3:76173073-76172794 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 187 |
| Conread position: | 4-275 |
| Cow position: | chr3:12671106-12670827 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 169 |
| Conread position: | 4-276 |
| Cow position: | chr3:14717403-14717678 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 160 |
| Conread position: | 4-277 |
| Cow position: | chr3:51032934-51033215 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 160 |
| Conread position: | 4-279 |
| Cow position: | chr3:1830976-1830697 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 188 |
| Conread position: | 4-279 |
| Cow position: | chr3:53903778-53904057 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 113 |
| Conread position: | 4-283 |
| Cow position: | chr3:36657183-36656898 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 4-286 |
| Cow position: | chr3:2506890-2506600 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 146 |
| Conread position: | 4-286 |
| Cow position: | chr3:3164903-3164619 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 80 |
| Conread position: | 4-286 |
| Cow position: | chr3:7678257-7678544 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 4-286 |
| Cow position: | chr3:14626561-14626281 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 159 |
| Conread position: | 5-271 |
| Cow position: | chr3:20746990-20746720 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 5-276 |
| Cow position: | chr3:82056518-82056250 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 209, 84 |
| Conread position: | 5-283 |
| Cow position: | chr3:62999407-62999126 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 5-289 |
| Cow position: | chr3:75728000-75727705 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 286 |
| Conread position: | 9-273 |
| Cow position: | chr3:4331949-4332232 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-274 |
| Cow position: | chr3:46900782-46901062 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 68, 162 |
| Conread position: | 11-287 |
| Cow position: | chr3:55039826-55039541 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 200, 281 |
| Conread position: | 15-273 |
| Cow position: | chr3:64716623-64716890 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 120 |
| Conread position: | 17-276 |
| Cow position: | chr3:42050310-42050035 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 143, 46 |
| Conread position: | 17-283 |
| Cow position: | chr3:68302930-68303206 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 262 |
| Conread position: | 18-280 |
| Cow position: | chr3:6402900-6403167 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 255 |
| Conread position: | 18-283 |
| Cow position: | chr3:51012935-51012661 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 262 |
| Conread position: | 18-289 |
| Cow position: | chr3:19708494-19708225 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 96 |
| Conread position: | 24-276 |
| Cow position: | chr3:44535151-44534899 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 129 |
| Conread position: | 26-276 |
| Cow position: | chr3:69849891-69849638 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 37-286 |
| Cow position: | chr3:18066756-18067011 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 238 |
| Conread position: | 47-272 |
| Cow position: | chr3:58286265-58286034 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 53-283 |
| Cow position: | chr3:68647798-68648036 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 161, 226 |
| Conread position: | 60-283 |
| Cow position: | chr3:72018768-72018988 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 156, 88 |
| Conread position: | 79-288 |
| Cow position: | chr3:81471433-81471221 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 137, 38 |
| Conread position: | 110-273 |
| Cow position: | chr3:70401598-70401767 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 110-276 |
| Cow position: | chr3:18763589-18763761 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 110-279 |
| Cow position: | chr3:83934209-83934389 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 110-283 |
| Cow position: | chr3:2216055-2216236 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 112-279 |
| Cow position: | chr3:19198378-19198551 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 162 |
| Conread position: | 124-286 |
| Cow position: | chr3:56704828-56704668 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 103, 94 |
| Conread position: | 127-277 |
| Cow position: | chr3:55124566-55124409 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 127-281 |
| Cow position: | chr3:33253172-33253008 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 127-286 |
| Cow position: | chr3:23876710-23876871 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 143 |
| Conread position: | 129-286 |
| Cow position: | chr3:83369036-83369195 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 153 |
| Conread position: | 133-283 |
| Cow position: | chr3:66901024-66900865 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 135-276 |
| Cow position: | chr3:63861181-63861029 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.