Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-272 |
| Cow position: | chr4:7501488-7501751 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 2-262 |
| Cow position: | chr4:66112470-66112203 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 15 |
| Conread position: | 4-253 |
| Cow position: | chr4:44839278-44839024 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 86 |
| Conread position: | 4-262 |
| Cow position: | chr4:5610464-5610201 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 113 |
| Conread position: | 4-272 |
| Cow position: | chr4:22073698-22073436 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 4-272 |
| Cow position: | chr4:22138629-22138352 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 94 |
| Conread position: | 4-272 |
| Cow position: | chr4:41097518-41097797 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 103 |
| Conread position: | 4-273 |
| Cow position: | chr4:37620282-37620007 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 144 |
| Conread position: | 4-283 |
| Cow position: | chr4:5984441-5984152 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 276 |
| Conread position: | 4-283 |
| Cow position: | chr4:43370244-43369965 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 23 |
| Conread position: | 4-283 |
| Cow position: | chr4:43543129-43542838 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 6-276 |
| Cow position: | chr4:5575730-5576013 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 131, 149 |
| Conread position: | 11-277 |
| Cow position: | chr4:24119299-24119024 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 14-272 |
| Cow position: | chr4:30574071-30574331 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 14-276 |
| Cow position: | chr4:39273823-39274094 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 122, 260 |
| Conread position: | 18-283 |
| Cow position: | chr4:11901941-11901674 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 101 |
| Conread position: | 19-271 |
| Cow position: | chr4:61999832-61999576 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 102 |
| Conread position: | 23-283 |
| Cow position: | chr4:29813909-29813652 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 171 |
| Conread position: | 27-283 |
| Cow position: | chr4:30973969-30974227 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 187, 44 |
| Conread position: | 32-289 |
| Cow position: | chr4:1915942-1915683 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 91 |
| Conread position: | 37-272 |
| Cow position: | chr4:22528743-22528508 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 167, 34 |
| Conread position: | 37-283 |
| Cow position: | chr4:13668975-13668737 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 37-283 |
| Cow position: | chr4:14742897-14743149 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 234 |
| Conread position: | 37-283 |
| Cow position: | chr4:18096021-18095783 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 177, 51 |
| Conread position: | 38-283 |
| Cow position: | chr4:42232308-42232545 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 164, 10 |
| Conread position: | 39-283 |
| Cow position: | chr4:19313645-19313898 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 177, 125 |
| Conread position: | 40-276 |
| Cow position: | chr4:1495760-1495521 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 102, 97 |
| Conread position: | 42-283 |
| Cow position: | chr4:15904744-15904985 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 172, 83 |
| Conread position: | 53-274 |
| Cow position: | chr4:65731273-65731038 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 72-262 |
| Cow position: | chr4:37915656-37915468 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 157, 80 |
| Conread position: | 78-282 |
| Cow position: | chr4:19561374-19561570 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 141, 68 |
| Conread position: | 79-262 |
| Cow position: | chr4:19597634-19597446 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 87-283 |
| Cow position: | chr4:34310767-34310563 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 127, 192 |
| Conread position: | 95-273 |
| Cow position: | chr4:49424540-49424712 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 124-283 |
| Cow position: | chr4:52632244-52632084 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 125-283 |
| Cow position: | chr4:19542520-19542684 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 149 |
| Conread position: | 125-283 |
| Cow position: | chr4:44612729-44612891 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 127-289 |
| Cow position: | chr4:29237422-29237263 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 129-283 |
| Cow position: | chr4:33623448-33623609 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.