Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-283 |
| Cow position: | chr5:26133438-26133151 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 10 |
| Conread position: | 1-283 |
| Cow position: | chr5:53855337-53855618 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 91 |
| Conread position: | 4-270 |
| Cow position: | chr5:41951443-41951174 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 4-271 |
| Cow position: | chr5:41129392-41129673 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 4-273 |
| Cow position: | chr5:47889077-47888796 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 4-276 |
| Cow position: | chr5:3204476-3204748 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 108 |
| Conread position: | 4-276 |
| Cow position: | chr5:70249793-70250061 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 139, 133 |
| Conread position: | 4-283 |
| Cow position: | chr5:28224098-28224374 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 4-283 |
| Cow position: | chr5:31635087-31635356 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 133, 25 |
| Conread position: | 4-283 |
| Cow position: | chr5:34463946-34463664 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 122, 45 |
| Conread position: | 4-283 |
| Cow position: | chr5:50821426-50821702 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 265 |
| Conread position: | 4-286 |
| Cow position: | chr5:46708819-46709111 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 4-286 |
| Cow position: | chr5:55068360-55068636 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 33 |
| Conread position: | 5-273 |
| Cow position: | chr5:58770210-58769932 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 73 |
| Conread position: | 5-286 |
| Cow position: | chr5:51309606-51309897 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 162, 186 |
| Conread position: | 6-249 |
| Cow position: | chr5:4071511-4071758 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 6-283 |
| Cow position: | chr5:54310969-54311255 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 9-280 |
| Cow position: | chr5:63967998-63967728 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 81 |
| Conread position: | 11-271 |
| Cow position: | chr5:45999376-45999109 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 196, 165 |
| Conread position: | 13-271 |
| Cow position: | chr5:3058318-3058590 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 112, 35 |
| Conread position: | 14-272 |
| Cow position: | chr5:32141051-32140795 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 14-274 |
| Cow position: | chr5:41936146-41935882 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 23 |
| Conread position: | 16-281 |
| Cow position: | chr5:41523140-41522876 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 101 |
| Conread position: | 18-283 |
| Cow position: | chr5:23856511-23856241 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 26-262 |
| Cow position: | chr5:39936763-39937005 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 138 |
| Conread position: | 43-286 |
| Cow position: | chr5:57327476-57327722 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 46-256 |
| Cow position: | chr5:60715675-60715458 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 56-273 |
| Cow position: | chr5:33081097-33080875 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 59-276 |
| Cow position: | chr5:4551825-4552052 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 155, 105 |
| Conread position: | 63-283 |
| Cow position: | chr5:6504169-6503957 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 151, 23 |
| Conread position: | 73-283 |
| Cow position: | chr5:59443544-59443328 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 143, 93 |
| Conread position: | 85-273 |
| Cow position: | chr5:52905769-52905580 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 138, 32 |
| Conread position: | 92-273 |
| Cow position: | chr5:37091049-37090857 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 108-274 |
| Cow position: | chr5:62870293-62870120 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 109-284 |
| Cow position: | chr5:46754470-46754655 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 171 |
| Conread position: | 121-274 |
| Cow position: | chr5:56135213-56135054 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 125-273 |
| Cow position: | chr5:26541055-26541206 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 127-282 |
| Cow position: | chr5:1247036-1247198 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 150 |
| Conread position: | 130-262 |
| Cow position: | chr5:34885392-34885253 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 130-286 |
| Cow position: | chr5:54064543-54064705 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 136-262 |
| Cow position: | chr5:30253515-30253644 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 139-286 |
| Cow position: | chr5:56820487-56820337 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 55 |
Show alignments to all cow chromosomes.