Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-273 |
| Cow position: | chr6:53345445-53345724 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-283 |
| Cow position: | chr6:35842311-35842589 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 10 |
| Conread position: | 4-272 |
| Cow position: | chr6:32916267-32915997 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 18 |
| Conread position: | 4-273 |
| Cow position: | chr6:11169360-11169633 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 160 |
| Conread position: | 4-273 |
| Cow position: | chr6:18080864-18080580 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-276 |
| Cow position: | chr6:1174849-1174568 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 129 |
| Conread position: | 4-278 |
| Cow position: | chr6:46205670-46205943 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 160 |
| Conread position: | 4-282 |
| Cow position: | chr6:25407752-25407457 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 124, 18 |
| Conread position: | 4-286 |
| Cow position: | chr6:12844962-12845251 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 5-262 |
| Cow position: | chr6:16737673-16737937 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 5-273 |
| Cow position: | chr6:47752-47479 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 201, 122 |
| Conread position: | 5-273 |
| Cow position: | chr6:46633916-46634184 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 84, 110 |
| Conread position: | 5-283 |
| Cow position: | chr6:33302063-33302345 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 94 |
| Conread position: | 11-283 |
| Cow position: | chr6:22877495-22877223 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 122 |
| Conread position: | 14-283 |
| Cow position: | chr6:9375709-9375432 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 73 |
| Conread position: | 17-283 |
| Cow position: | chr6:5672895-5673171 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 197, 65 |
| Conread position: | 17-283 |
| Cow position: | chr6:54140484-54140744 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 20 |
| Conread position: | 26-273 |
| Cow position: | chr6:6642914-6642673 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 27-286 |
| Cow position: | chr6:19681841-19681583 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 181, 98 |
| Conread position: | 28-283 |
| Cow position: | chr6:12116374-12116112 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 186, 26 |
| Conread position: | 30-267 |
| Cow position: | chr6:5095876-5095632 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 38-283 |
| Cow position: | chr6:12337671-12337921 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 126 |
| Conread position: | 40-278 |
| Cow position: | chr6:40264511-40264268 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 40-286 |
| Cow position: | chr6:9008919-9008672 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 85 |
| Conread position: | 45-283 |
| Cow position: | chr6:5329848-5330085 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 171, 103 |
| Conread position: | 54-283 |
| Cow position: | chr6:60057962-60057719 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 5 |
| Conread position: | 60-272 |
| Cow position: | chr6:34196440-34196223 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 156, 163 |
| Conread position: | 60-283 |
| Cow position: | chr6:54369188-54368964 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 154, 57 |
| Conread position: | 71-283 |
| Cow position: | chr6:21534778-21534990 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 199 |
| Conread position: | 91-283 |
| Cow position: | chr6:57411385-57411567 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 98-281 |
| Cow position: | chr6:17068074-17067886 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 125-283 |
| Cow position: | chr6:15301044-15300884 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 125-283 |
| Cow position: | chr6:68049209-68049371 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 126-286 |
| Cow position: | chr6:59302052-59301881 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 165 |
| Conread position: | 127-262 |
| Cow position: | chr6:20605709-20605854 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 129-287 |
| Cow position: | chr6:41733404-41733567 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 144-281 |
| Cow position: | chr6:54864874-54864738 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 149-282 |
| Cow position: | chr6:66131105-66131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 122 |
Show alignments to all cow chromosomes.