Cow genome map

Conread name: rret35_i21.y1

Conread position: 1-271
Cow position: chrX:40452576-40452296 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 10

Conread position: 1-272
Cow position: chrX:14599173-14599447 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 113, 10

Conread position: 1-275
Cow position: chrX:40515541-40515811 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 35

Conread position: 1-276
Cow position: chrX:24200836-24201104 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 204, 22

Conread position: 1-283
Cow position: chrX:37489354-37489649 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 282

Conread position: 1-355
Cow position: chrX:25283504-25283150 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 102

Conread position: 2-266
Cow position: chrX:41192326-41192594 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 146

Conread position: 2-294
Cow position: chrX:21665954-21665658 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 100

Conread position: 3-272
Cow position: chrX:16722166-16721890 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 18

Conread position: 4-273
Cow position: chrX:38072128-38071850 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 104

Conread position: 4-276
Cow position: chrX:44907955-44908237 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 133, 83

Conread position: 4-277
Cow position: chrX:34441808-34441533 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 113

Conread position: 4-283
Cow position: chrX:21592925-21593209 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 112

Conread position: 4-286
Cow position: chrX:36250223-36249935 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 282

Conread position: 4-307
Cow position: chrX:10916393-10916692 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 262

Conread position: 5-274
Cow position: chrX:4633211-4632936 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 96

Conread position: 5-276
Cow position: chrX:7381964-7382241 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 77

Conread position: 5-276
Cow position: chrX:11674699-11674982 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 14, 23

Conread position: 5-283
Cow position: chrX:1810520-1810238 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 5-283
Cow position: chrX:35409308-35409582 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 155

Conread position: 5-285
Cow position: chrX:47362246-47361955 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 201, 0

Conread position: 5-288
Cow position: chrX:3161376-3161085 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 268

Conread position: 8-284
Cow position: chrX:19689858-19690147 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 54

Conread position: 10-276
Cow position: chrX:17271643-17271367 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 192, 26

Conread position: 11-259
Cow position: chrX:13923084-13923323 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 193, 62

Conread position: 11-270
Cow position: chrX:6655620-6655351 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 195, 26

Conread position: 11-271
Cow position: chrX:18118825-18118555 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 195, 14

Conread position: 12-283
Cow position: chrX:5871960-5872242 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 107

Conread position: 12-283
Cow position: chrX:31443173-31442900 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 66

Conread position: 14-281
Cow position: chrX:24105276-24105547 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 23

Conread position: 14-286
Cow position: chrX:31729107-31729368 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 152

Conread position: 15-283
Cow position: chrX:7695414-7695670 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 18-262
Cow position: chrX:10412333-10412081 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 148

Conread position: 18-283
Cow position: chrX:11844585-11844323 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 99

Conread position: 28-276
Cow position: chrX:42855073-42855330 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 90

Conread position: 30-281
Cow position: chrX:33639632-33639894 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 19, 53

Conread position: 40-286
Cow position: chrX:33466292-33466536 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 174, 114

Conread position: 84-283
Cow position: chrX:42874697-42874905 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 130, 80

Conread position: 88-272
Cow position: chrX:8925429-8925615 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 69, 29

Conread position: 90-277
Cow position: chrX:7496974-7497162 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 13

Conread position: 92-259
Cow position: chrX:5856596-5856422 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 122, 60

Conread position: 125-277
Cow position: chrX:35284377-35284538 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 125-283
Cow position: chrX:23514258-23514094 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 57

Conread position: 125-286
Cow position: chrX:21672311-21672482 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 89, 165

Conread position: 125-289
Cow position: chrX:23970149-23970313 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 39

Conread position: 127-283
Cow position: chrX:42492748-42492592 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 21

Conread position: 131-286
Cow position: chrX:11856195-11856355 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 47

Conread position: 133-283
Cow position: chrX:36975717-36975873 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 81, 143

Conread position: 138-283
Cow position: chrX:48684450-48684304 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 128

Conread position: 139-262
Cow position: chrX:4942976-4942850 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 144-273
Cow position: chrX:45015364-45015493 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 79

Conread position: 144-279
Cow position: chrX:23091660-23091801 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 130

Show alignments to all cow chromosomes.