Cow genome map
Conread name: | rret35_i21.y1 |
Conread position: | 1-271 |
Cow position: | chrX:40452576-40452296 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 10 |
Conread position: | 1-272 |
Cow position: | chrX:14599173-14599447 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 208 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 113, 10 |
Conread position: | 1-275 |
Cow position: | chrX:40515541-40515811 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 193 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 5, 35 |
Conread position: | 1-276 |
Cow position: | chrX:24200836-24201104 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 198 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 204, 22 |
Conread position: | 1-283 |
Cow position: | chrX:37489354-37489649 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 282 |
Conread position: | 1-355 |
Cow position: | chrX:25283504-25283150 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 213, 102 |
Conread position: | 2-266 |
Cow position: | chrX:41192326-41192594 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 146 |
Conread position: | 2-294 |
Cow position: | chrX:21665954-21665658 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 100 |
Conread position: | 3-272 |
Cow position: | chrX:16722166-16721890 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 18 |
Conread position: | 4-273 |
Cow position: | chrX:38072128-38071850 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 214, 104 |
Conread position: | 4-276 |
Cow position: | chrX:44907955-44908237 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 201 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 133, 83 |
Conread position: | 4-277 |
Cow position: | chrX:34441808-34441533 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 113 |
Conread position: | 4-283 |
Cow position: | chrX:21592925-21593209 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 112 |
Conread position: | 4-286 |
Cow position: | chrX:36250223-36249935 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 282 |
Conread position: | 4-307 |
Cow position: | chrX:10916393-10916692 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 262 |
Conread position: | 5-274 |
Cow position: | chrX:4633211-4632936 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 96 |
Conread position: | 5-276 |
Cow position: | chrX:7381964-7382241 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 77 |
Conread position: | 5-276 |
Cow position: | chrX:11674699-11674982 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 210 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 14, 23 |
Conread position: | 5-283 |
Cow position: | chrX:1810520-1810238 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 33 |
Conread position: | 5-283 |
Cow position: | chrX:35409308-35409582 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 155 |
Conread position: | 5-285 |
Cow position: | chrX:47362246-47361955 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 205 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 201, 0 |
Conread position: | 5-288 |
Cow position: | chrX:3161376-3161085 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 163, 268 |
Conread position: | 8-284 |
Cow position: | chrX:19689858-19690147 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 54 |
Conread position: | 10-276 |
Cow position: | chrX:17271643-17271367 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 205 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 192, 26 |
Conread position: | 11-259 |
Cow position: | chrX:13923084-13923323 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 184 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 193, 62 |
Conread position: | 11-270 |
Cow position: | chrX:6655620-6655351 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 191 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 195, 26 |
Conread position: | 11-271 |
Cow position: | chrX:18118825-18118555 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 193 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 195, 14 |
Conread position: | 12-283 |
Cow position: | chrX:5871960-5872242 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 107 |
Conread position: | 12-283 |
Cow position: | chrX:31443173-31442900 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 66 |
Conread position: | 14-281 |
Cow position: | chrX:24105276-24105547 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 23 |
Conread position: | 14-286 |
Cow position: | chrX:31729107-31729368 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 152 |
Conread position: | 15-283 |
Cow position: | chrX:7695414-7695670 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 0 |
Conread position: | 18-262 |
Cow position: | chrX:10412333-10412081 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 197, 148 |
Conread position: | 18-283 |
Cow position: | chrX:11844585-11844323 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 188, 99 |
Conread position: | 28-276 |
Cow position: | chrX:42855073-42855330 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 90 |
Conread position: | 30-281 |
Cow position: | chrX:33639632-33639894 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 199 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 19, 53 |
Conread position: | 40-286 |
Cow position: | chrX:33466292-33466536 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 191 |
Alignm E-value: | 8.96831e-44 |
Alignm gaps (pig, cow): | 174, 114 |
Conread position: | 84-283 |
Cow position: | chrX:42874697-42874905 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 169 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 130, 80 |
Conread position: | 88-272 |
Cow position: | chrX:8925429-8925615 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 149 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 69, 29 |
Conread position: | 90-277 |
Cow position: | chrX:7496974-7497162 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 145 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 124, 13 |
Conread position: | 92-259 |
Cow position: | chrX:5856596-5856422 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 138 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 122, 60 |
Conread position: | 125-277 |
Cow position: | chrX:35284377-35284538 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 126 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 125-283 |
Cow position: | chrX:23514258-23514094 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 130 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 80, 57 |
Conread position: | 125-286 |
Cow position: | chrX:21672311-21672482 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 128 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 89, 165 |
Conread position: | 125-289 |
Cow position: | chrX:23970149-23970313 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 125 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 89, 39 |
Conread position: | 127-283 |
Cow position: | chrX:42492748-42492592 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 127 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 87, 21 |
Conread position: | 131-286 |
Cow position: | chrX:11856195-11856355 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 123 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 83, 47 |
Conread position: | 133-283 |
Cow position: | chrX:36975717-36975873 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 124 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 81, 143 |
Conread position: | 138-283 |
Cow position: | chrX:48684450-48684304 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 114 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 76, 128 |
Conread position: | 139-262 |
Cow position: | chrX:4942976-4942850 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 102 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 144-273 |
Cow position: | chrX:45015364-45015493 (view UCSC Genome Browser custom track) |
Alignm length: | 131 |
Alignm identity: | 99 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 22, 79 |
Conread position: | 144-279 |
Cow position: | chrX:23091660-23091801 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 110 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 70, 130 |
Show alignments to all cow chromosomes.