Cow genome map

Conread name: rsag034_i21.y1

Conread position: 4-201
Cow position: chr1:97806498-97806696 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 137, 27

Conread position: 9-203
Cow position: chr1:197299-197094 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 31

Conread position: 18-185
Cow position: chr1:64160055-64160229 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 18

Conread position: 21-203
Cow position: chr1:68818078-68817889 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 118, 19

Conread position: 26-201
Cow position: chr1:3924072-3923887 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 22

Conread position: 26-202
Cow position: chr1:72304649-72304462 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 29

Conread position: 27-202
Cow position: chr1:52913138-52912966 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 28, 14

Conread position: 27-203
Cow position: chr1:74084467-74084285 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 28, 13

Conread position: 34-200
Cow position: chr1:42555001-42555170 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 5

Conread position: 39-194
Cow position: chr1:81579498-81579667 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 16

Conread position: 39-200
Cow position: chr1:43505258-43505431 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 16

Conread position: 39-201
Cow position: chr1:12596166-12595996 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 104, 16

Conread position: 39-201
Cow position: chr1:12871272-12871102 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 86, 14

Conread position: 39-201
Cow position: chr1:20384886-20384712 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 102, 16

Conread position: 39-201
Cow position: chr1:39069218-39069047 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 39-201
Cow position: chr1:44125904-44125739 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 20, 48

Conread position: 39-201
Cow position: chr1:70380411-70380238 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 16

Conread position: 39-201
Cow position: chr1:87216196-87216369 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 8

Conread position: 39-203
Cow position: chr1:67821475-67821301 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 16

Conread position: 40-179
Cow position: chr1:34856893-34856751 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 105, 15

Conread position: 40-203
Cow position: chr1:31414223-31414051 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 86, 41

Conread position: 40-203
Cow position: chr1:75744594-75744770 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 0

Conread position: 41-201
Cow position: chr1:22826905-22827075 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 42-201
Cow position: chr1:21835684-21835853 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 42-201
Cow position: chr1:48105696-48105526 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 13

Conread position: 42-201
Cow position: chr1:82884647-82884482 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 95, 13

Conread position: 42-201
Cow position: chr1:89349715-89349870 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 43-200
Cow position: chr1:1991691-1991514 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 43-200
Cow position: chr1:52039376-52039543 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 98, 12

Conread position: 43-201
Cow position: chr1:13637928-13637765 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 12

Conread position: 43-201
Cow position: chr1:22448845-22448679 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 98, 12

Conread position: 43-201
Cow position: chr1:40599791-40599951 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 104, 12

Conread position: 43-201
Cow position: chr1:42874208-42874039 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 96, 12

Conread position: 43-201
Cow position: chr1:44155001-44155157 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 131
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 117, 12

Conread position: 43-201
Cow position: chr1:51968209-51968368 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 12

Conread position: 43-201
Cow position: chr1:53458444-53458604 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 49, 12

Conread position: 43-201
Cow position: chr1:56228993-56229159 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 100, 12

Conread position: 43-201
Cow position: chr1:72069088-72068931 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 12

Conread position: 43-201
Cow position: chr1:72286310-72286149 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 100, 12

Conread position: 43-201
Cow position: chr1:81613124-81613297 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 93, 12

Conread position: 43-201
Cow position: chr1:82936843-82936678 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 100, 14

Conread position: 43-201
Cow position: chr1:84240639-84240800 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 102, 12

Conread position: 43-201
Cow position: chr1:85774196-85774368 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 43-201
Cow position: chr1:95017774-95017611 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 98, 15

Conread position: 43-202
Cow position: chr1:42887522-42887356 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 100, 12

Conread position: 43-202
Cow position: chr1:54207077-54206910 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 95, 12

Conread position: 43-202
Cow position: chr1:61742229-61742059 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 138
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 41, 12

Conread position: 43-202
Cow position: chr1:62964018-62964187 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 101, 12

Conread position: 43-203
Cow position: chr1:1981373-1981204 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 43-203
Cow position: chr1:25383398-25383572 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 12

Conread position: 43-203
Cow position: chr1:40062187-40062362 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 12

Conread position: 43-203
Cow position: chr1:77099801-77099639 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 136
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 45, 12

Conread position: 43-203
Cow position: chr1:79844208-79844374 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 140
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 100, 12

Conread position: 43-203
Cow position: chr1:97954709-97954549 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 87, 12

Conread position: 44-203
Cow position: chr1:41696799-41696968 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 97, 18

Conread position: 45-185
Cow position: chr1:22730501-22730647 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 45-200
Cow position: chr1:24133314-24133151 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 99, 10

Conread position: 45-200
Cow position: chr1:70828653-70828809 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 10, 50

Conread position: 45-201
Cow position: chr1:33811673-33811837 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 45-203
Cow position: chr1:56225218-56225376 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 103, 10

Conread position: 45-203
Cow position: chr1:77462103-77462270 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 10, 38

Conread position: 45-203
Cow position: chr1:99136691-99136521 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 10, 46

Conread position: 46-200
Cow position: chr1:34300806-34300643 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 91, 9

Conread position: 46-200
Cow position: chr1:37646261-37646098 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 46-200
Cow position: chr1:88652373-88652537 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 138
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 92, 9

Conread position: 46-201
Cow position: chr1:3035252-3035085 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 47-194
Cow position: chr1:10778315-10778467 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 131
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 8, 35

Conread position: 47-200
Cow position: chr1:94226807-94226645 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 8, 150

Conread position: 48-201
Cow position: chr1:96947950-96947796 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 99, 7

Conread position: 48-203
Cow position: chr1:19482332-19482165 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 51-201
Cow position: chr1:81363740-81363892 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 90, 30

Conread position: 53-200
Cow position: chr1:24534495-24534347 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 90

Conread position: 53-201
Cow position: chr1:5023992-5023848 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 89

Conread position: 53-201
Cow position: chr1:47233727-47233571 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 128
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 53-201
Cow position: chr1:78857575-78857413 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 5, 29

Conread position: 54-200
Cow position: chr1:3720677-3720527 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 27

Conread position: 54-200
Cow position: chr1:14379781-14379628 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 129
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 90, 67

Conread position: 54-200
Cow position: chr1:75967185-75967338 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 0

Conread position: 54-201
Cow position: chr1:3872600-3872759 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 54-203
Cow position: chr1:71253806-71253643 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 55-185
Cow position: chr1:9437799-9437657 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 55-200
Cow position: chr1:89729207-89729067 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 29

Conread position: 55-201
Cow position: chr1:10632803-10632956 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 86, 0

Conread position: 55-201
Cow position: chr1:50931219-50931068 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 77

Conread position: 55-203
Cow position: chr1:31348158-31348006 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 28

Conread position: 55-203
Cow position: chr1:36931909-36932067 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 56-201
Cow position: chr1:68854926-68855076 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 81, 25

Conread position: 56-203
Cow position: chr1:58439295-58439140 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 25

Conread position: 59-201
Cow position: chr1:51531527-51531675 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 60-201
Cow position: chr1:84239352-84239205 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 61-185
Cow position: chr1:22227613-22227738 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 62-193
Cow position: chr1:43649777-43649643 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 19

Conread position: 63-200
Cow position: chr1:95056813-95056962 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 63-201
Cow position: chr1:62996253-62996402 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 18

Conread position: 64-201
Cow position: chr1:94403975-94404120 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 65-199
Cow position: chr1:25281916-25281770 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 66-187
Cow position: chr1:40531348-40531223 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 35

Conread position: 87-201
Cow position: chr1:7971212-7971329 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.