Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 12-201 |
| Cow position: | chr10:38014046-38014243 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 13-199 |
| Cow position: | chr10:24871568-24871764 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 13-203 |
| Cow position: | chr10:31027958-31027766 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 5 |
| Conread position: | 15-187 |
| Cow position: | chr10:58259839-58259652 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 15-201 |
| Cow position: | chr10:9798511-9798320 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 5 |
| Conread position: | 19-188 |
| Cow position: | chr10:58746545-58746375 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 26-201 |
| Cow position: | chr10:20505232-20505417 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 26-201 |
| Cow position: | chr10:23936176-23936362 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 117, 13 |
| Conread position: | 26-201 |
| Cow position: | chr10:35857362-35857177 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 26-201 |
| Cow position: | chr10:55600494-55600325 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 27-185 |
| Cow position: | chr10:53178993-53179158 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 27-200 |
| Cow position: | chr10:30352537-30352724 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 27-200 |
| Cow position: | chr10:41941889-41941700 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 27-203 |
| Cow position: | chr10:13765472-13765285 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 30-201 |
| Cow position: | chr10:15872170-15871994 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 36-203 |
| Cow position: | chr10:24763180-24763357 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 39-187 |
| Cow position: | chr10:6505065-6505227 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 39-200 |
| Cow position: | chr10:8093609-8093437 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 39-200 |
| Cow position: | chr10:27828033-27828207 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 39-201 |
| Cow position: | chr10:12314871-12315034 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 39-201 |
| Cow position: | chr10:42230367-42230538 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 39-201 |
| Cow position: | chr10:59664260-59664099 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 40-203 |
| Cow position: | chr10:34554385-34554208 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 42-203 |
| Cow position: | chr10:5264408-5264578 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 42-203 |
| Cow position: | chr10:32774822-32774988 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 43-201 |
| Cow position: | chr10:15462206-15462367 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 43-201 |
| Cow position: | chr10:19372620-19372460 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 43-201 |
| Cow position: | chr10:19895108-19895274 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr10:20446808-20446972 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr10:21461949-21462116 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 43-201 |
| Cow position: | chr10:28776081-28776228 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-201 |
| Cow position: | chr10:50016284-50016127 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 43-203 |
| Cow position: | chr10:24971888-24971733 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-203 |
| Cow position: | chr10:46195502-46195662 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 43-203 |
| Cow position: | chr10:51944071-51944238 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr10:53674531-53674704 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-203 |
| Cow position: | chr10:54469674-54469515 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 120, 12 |
| Conread position: | 44-196 |
| Cow position: | chr10:22786608-22786772 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 44-201 |
| Cow position: | chr10:1488558-1488717 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 44-201 |
| Cow position: | chr10:30746113-30746278 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 44-203 |
| Cow position: | chr10:21082105-21082264 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 44-203 |
| Cow position: | chr10:38725369-38725537 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 45-199 |
| Cow position: | chr10:2613089-2613242 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 45-200 |
| Cow position: | chr10:60936661-60936822 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr10:16598397-16598564 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr10:22528192-22528026 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 45-201 |
| Cow position: | chr10:45769749-45769920 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-203 |
| Cow position: | chr10:6489576-6489749 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 45-203 |
| Cow position: | chr10:17073644-17073479 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-203 |
| Cow position: | chr10:28835941-28836102 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 46-185 |
| Cow position: | chr10:24308185-24308053 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 46-197 |
| Cow position: | chr10:26608177-26608011 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 46-201 |
| Cow position: | chr10:20735418-20735583 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 46-201 |
| Cow position: | chr10:28721502-28721665 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 46-201 |
| Cow position: | chr10:51696462-51696620 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 46-201 |
| Cow position: | chr10:56475180-56475344 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 46-203 |
| Cow position: | chr10:77101-77269 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 46-203 |
| Cow position: | chr10:34655400-34655233 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 46-203 |
| Cow position: | chr10:55733888-55733720 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 46-203 |
| Cow position: | chr10:67443394-67443226 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 47-200 |
| Cow position: | chr10:49146245-49146397 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 47-201 |
| Cow position: | chr10:15818084-15817915 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 47-201 |
| Cow position: | chr10:54848490-54848654 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 48-201 |
| Cow position: | chr10:2703936-2704087 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 49-201 |
| Cow position: | chr10:31362495-31362330 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 6 |
| Conread position: | 52-200 |
| Cow position: | chr10:45370774-45370931 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 34 |
| Conread position: | 54-192 |
| Cow position: | chr10:8934205-8934353 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 54-203 |
| Cow position: | chr10:10046330-10046173 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 54-203 |
| Cow position: | chr10:33665558-33665718 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 55-200 |
| Cow position: | chr10:24744277-24744424 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 56 |
| Conread position: | 55-201 |
| Cow position: | chr10:35901055-35901207 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 55-201 |
| Cow position: | chr10:39227876-39228023 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 107, 86 |
| Conread position: | 55-203 |
| Cow position: | chr10:25699385-25699532 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 59-203 |
| Cow position: | chr10:21657144-21657303 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 64-200 |
| Cow position: | chr10:28105344-28105206 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 69-201 |
| Cow position: | chr10:59152130-59151986 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 75-203 |
| Cow position: | chr10:39875406-39875266 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 76-203 |
| Cow position: | chr10:28395552-28395420 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.