Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 3-201 |
| Cow position: | chr11:25165119-25165326 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 6-203 |
| Cow position: | chr11:19507975-19508181 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 15-197 |
| Cow position: | chr11:46580051-46580235 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 24-201 |
| Cow position: | chr11:48932890-48932701 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 58 |
| Conread position: | 27-203 |
| Cow position: | chr11:10620629-10620439 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 32-201 |
| Cow position: | chr11:80824872-80825045 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 33-201 |
| Cow position: | chr11:68207133-68206955 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 33-203 |
| Cow position: | chr11:48428799-48428969 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 86, 7 |
| Conread position: | 35-197 |
| Cow position: | chr11:7334017-7333843 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 39-199 |
| Cow position: | chr11:16251540-16251365 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 39-200 |
| Cow position: | chr11:35881620-35881793 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 39-201 |
| Cow position: | chr11:41577296-41577130 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 39-203 |
| Cow position: | chr11:62225709-62225872 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 40-201 |
| Cow position: | chr11:23128825-23128659 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 15 |
| Conread position: | 41-184 |
| Cow position: | chr11:49105767-49105920 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 42-196 |
| Cow position: | chr11:65987943-65988107 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 42-201 |
| Cow position: | chr11:35874268-35874108 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 42-201 |
| Cow position: | chr11:86926206-86926043 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 43-158 |
| Cow position: | chr11:80923622-80923507 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 43-185 |
| Cow position: | chr11:7248163-7248013 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 43-190 |
| Cow position: | chr11:10076488-10076638 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 43-192 |
| Cow position: | chr11:25386784-25386938 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 107, 12 |
| Conread position: | 43-201 |
| Cow position: | chr11:26483433-26483598 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-201 |
| Cow position: | chr11:37068590-37068425 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 43-201 |
| Cow position: | chr11:47586634-47586464 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-201 |
| Cow position: | chr11:62490147-62490316 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr11:81066868-81066701 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 43-203 |
| Cow position: | chr11:955078-955251 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 43-203 |
| Cow position: | chr11:36182402-36182572 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr11:44637047-44636872 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 43-203 |
| Cow position: | chr11:48496853-48496702 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 43-203 |
| Cow position: | chr11:64334571-64334743 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 44-200 |
| Cow position: | chr11:44642573-44642404 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 44-201 |
| Cow position: | chr11:19787858-19788021 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 44-201 |
| Cow position: | chr11:73512707-73512547 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 44-203 |
| Cow position: | chr11:39499091-39499244 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 45-202 |
| Cow position: | chr11:39115209-39115378 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 45-203 |
| Cow position: | chr11:50153104-50152930 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 46-200 |
| Cow position: | chr11:60302241-60302076 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 46-201 |
| Cow position: | chr11:53552973-53553120 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 46-203 |
| Cow position: | chr11:30120946-30120780 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 46-203 |
| Cow position: | chr11:40818928-40818752 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 47-201 |
| Cow position: | chr11:69119017-69119186 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 47-201 |
| Cow position: | chr11:84774835-84774994 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 47-203 |
| Cow position: | chr11:13061506-13061344 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 100, 8 |
| Conread position: | 48-200 |
| Cow position: | chr11:45632046-45631879 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 48-203 |
| Cow position: | chr11:65430781-65430945 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 52-203 |
| Cow position: | chr11:44222621-44222776 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 54-184 |
| Cow position: | chr11:40396051-40396188 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 54-201 |
| Cow position: | chr11:45646867-45646711 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 54-201 |
| Cow position: | chr11:46746359-46746512 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 54-201 |
| Cow position: | chr11:82232145-82232299 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 54-201 |
| Cow position: | chr11:83043637-83043480 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 55-198 |
| Cow position: | chr11:57499089-57498928 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 55-201 |
| Cow position: | chr11:59156146-59155995 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 55-201 |
| Cow position: | chr11:75510508-75510347 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 55-202 |
| Cow position: | chr11:75355334-75355495 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 56-200 |
| Cow position: | chr11:36496580-36496729 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 56-201 |
| Cow position: | chr11:17227914-17227762 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 56-201 |
| Cow position: | chr11:52381145-52380990 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 56-201 |
| Cow position: | chr11:73924833-73924676 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 57-201 |
| Cow position: | chr11:8105509-8105666 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 60-199 |
| Cow position: | chr11:986669-986815 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 68-194 |
| Cow position: | chr11:31227732-31227866 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 70-201 |
| Cow position: | chr11:78381307-78381170 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.