Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 11-196 |
| Cow position: | chr13:5658446-5658639 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 13-201 |
| Cow position: | chr13:43594830-43595029 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 21-201 |
| Cow position: | chr13:43629502-43629686 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 27-201 |
| Cow position: | chr13:30693969-30693789 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 121, 13 |
| Conread position: | 37-201 |
| Cow position: | chr13:48037881-48037705 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 39-201 |
| Cow position: | chr13:43762424-43762253 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 39-201 |
| Cow position: | chr13:56686684-56686516 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 40-202 |
| Cow position: | chr13:52922346-52922175 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 41-200 |
| Cow position: | chr13:6079161-6079334 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 42-201 |
| Cow position: | chr13:13261264-13261088 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 42-201 |
| Cow position: | chr13:29122587-29122752 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 42-203 |
| Cow position: | chr13:20820587-20820754 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 42-203 |
| Cow position: | chr13:44202243-44202074 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 43-185 |
| Cow position: | chr13:52894395-52894247 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-188 |
| Cow position: | chr13:25434876-25435023 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 43-194 |
| Cow position: | chr13:46329211-46329376 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 43-200 |
| Cow position: | chr13:55295373-55295538 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-201 |
| Cow position: | chr13:9142535-9142374 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 43-201 |
| Cow position: | chr13:15349017-15349178 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 12 |
| Conread position: | 43-201 |
| Cow position: | chr13:21287837-21288002 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr13:22085504-22085660 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-201 |
| Cow position: | chr13:38283731-38283902 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 43-202 |
| Cow position: | chr13:15234163-15233997 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr13:971645-971811 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr13:2774374-2774209 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 43-203 |
| Cow position: | chr13:11820830-11820676 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-203 |
| Cow position: | chr13:19426445-19426614 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr13:25817766-25817604 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 44-203 |
| Cow position: | chr13:20440351-20440505 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 45-185 |
| Cow position: | chr13:1767020-1766871 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 45-199 |
| Cow position: | chr13:55843735-55843569 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 45-199 |
| Cow position: | chr13:61976712-61976879 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 45-201 |
| Cow position: | chr13:12670194-12670364 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 45-201 |
| Cow position: | chr13:17970782-17970944 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-201 |
| Cow position: | chr13:18244109-18243945 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr13:47313156-47313003 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-203 |
| Cow position: | chr13:18835439-18835274 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-203 |
| Cow position: | chr13:46525190-46525364 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 46-185 |
| Cow position: | chr13:21988852-21989006 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 46-189 |
| Cow position: | chr13:18215679-18215523 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 46-201 |
| Cow position: | chr13:18166980-18166817 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 46-201 |
| Cow position: | chr13:21276105-21275938 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 46-203 |
| Cow position: | chr13:26098392-26098227 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 47-200 |
| Cow position: | chr13:47007489-47007645 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 47-201 |
| Cow position: | chr13:17800321-17800156 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 47-201 |
| Cow position: | chr13:21235436-21235603 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 48-201 |
| Cow position: | chr13:31814117-31813955 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 50-201 |
| Cow position: | chr13:44323149-44322984 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 54-194 |
| Cow position: | chr13:14378229-14378081 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 54-201 |
| Cow position: | chr13:24060108-24060255 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 54-203 |
| Cow position: | chr13:21107367-21107221 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 54-203 |
| Cow position: | chr13:21241849-21242011 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 54-203 |
| Cow position: | chr13:25062653-25062490 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 54-203 |
| Cow position: | chr13:56154918-56155077 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 61-203 |
| Cow position: | chr13:34263137-34263287 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 74-203 |
| Cow position: | chr13:12202587-12202448 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 76-197 |
| Cow position: | chr13:20679566-20679436 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 76-201 |
| Cow position: | chr13:37795655-37795523 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.