Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 1-201 |
| Cow position: | chr17:9746250-9746457 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 2-201 |
| Cow position: | chr17:6423492-6423703 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 3-194 |
| Cow position: | chr17:16307110-16307313 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 15-201 |
| Cow position: | chr17:5423324-5423128 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 126, 27 |
| Conread position: | 21-185 |
| Cow position: | chr17:5745493-5745324 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 24-201 |
| Cow position: | chr17:1359042-1358858 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 26-203 |
| Cow position: | chr17:24761468-24761283 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 27-185 |
| Cow position: | chr17:9778007-9778172 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 27-201 |
| Cow position: | chr17:15333955-15333770 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 31-203 |
| Cow position: | chr17:33933972-33933804 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 39-201 |
| Cow position: | chr17:36533430-36533599 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 39-203 |
| Cow position: | chr17:5767683-5767859 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 41-194 |
| Cow position: | chr17:25542039-25541878 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 42-194 |
| Cow position: | chr17:2270540-2270691 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 13 |
| Conread position: | 42-196 |
| Cow position: | chr17:34079326-34079166 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 42-201 |
| Cow position: | chr17:15103116-15102942 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 42-203 |
| Cow position: | chr17:15132938-15133101 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 43-188 |
| Cow position: | chr17:26084808-26084963 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 43-194 |
| Cow position: | chr17:40802585-40802738 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-199 |
| Cow position: | chr17:35126485-35126648 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-200 |
| Cow position: | chr17:21017567-21017738 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-200 |
| Cow position: | chr17:29715413-29715245 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 43-201 |
| Cow position: | chr17:21335925-21335752 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr17:30539476-30539310 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 43-201 |
| Cow position: | chr17:42347448-42347283 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr17:3306641-3306811 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr17:5000801-5000634 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr17:20082006-20081843 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 45-201 |
| Cow position: | chr17:9565082-9565252 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr17:30529763-30529597 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 45-203 |
| Cow position: | chr17:9117418-9117591 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 45-203 |
| Cow position: | chr17:18495734-18495576 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 46-187 |
| Cow position: | chr17:26182998-26183147 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 46-194 |
| Cow position: | chr17:32138624-32138480 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 46-199 |
| Cow position: | chr17:8644813-8644980 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 47-200 |
| Cow position: | chr17:11102017-11101859 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 8 |
| Conread position: | 47-201 |
| Cow position: | chr17:41290240-41290078 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 48-203 |
| Cow position: | chr17:32989269-32989426 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 48-203 |
| Cow position: | chr17:32993837-32993674 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 54-193 |
| Cow position: | chr17:24004178-24004317 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 11 |
| Conread position: | 54-201 |
| Cow position: | chr17:5224186-5224343 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 54-201 |
| Cow position: | chr17:21115165-21115008 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 54-203 |
| Cow position: | chr17:18472962-18473123 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 54-203 |
| Cow position: | chr17:30713136-30713293 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 55-201 |
| Cow position: | chr17:12325962-12325805 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 56-199 |
| Cow position: | chr17:11216098-11215951 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 56-201 |
| Cow position: | chr17:18592224-18592386 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 58-200 |
| Cow position: | chr17:3781831-3781986 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 61-201 |
| Cow position: | chr17:27765071-27765212 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 110 |
| Conread position: | 62-203 |
| Cow position: | chr17:38646859-38647004 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 75-201 |
| Cow position: | chr17:24824056-24824190 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 130 |
| Conread position: | 76-194 |
| Cow position: | chr17:20072270-20072146 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.