Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 2-196 |
| Cow position: | chr2:32408786-32408595 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 2-199 |
| Cow position: | chr2:41248255-41248467 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 3-201 |
| Cow position: | chr2:42927762-42927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 9-201 |
| Cow position: | chr2:45881069-45880876 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 23-201 |
| Cow position: | chr2:44167794-44167975 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 26-200 |
| Cow position: | chr2:36878499-36878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 26-202 |
| Cow position: | chr2:46189375-46189195 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 35-197 |
| Cow position: | chr2:53000233-53000409 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 35-201 |
| Cow position: | chr2:333353-333183 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 39-201 |
| Cow position: | chr2:45554047-45554217 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 39-201 |
| Cow position: | chr2:46245711-46245533 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 39-203 |
| Cow position: | chr2:4273537-4273365 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 39-203 |
| Cow position: | chr2:15693959-15694132 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 40-201 |
| Cow position: | chr2:32417129-32416953 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 42-184 |
| Cow position: | chr2:56771573-56771725 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 42-199 |
| Cow position: | chr2:13582316-13582482 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 42-199 |
| Cow position: | chr2:73095052-73094888 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 42-201 |
| Cow position: | chr2:6951942-6952098 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 42-201 |
| Cow position: | chr2:43624795-43624625 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 42-201 |
| Cow position: | chr2:51824658-51824826 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 42-203 |
| Cow position: | chr2:13369393-13369560 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 42-203 |
| Cow position: | chr2:85458968-85459142 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 43-185 |
| Cow position: | chr2:76314122-76313978 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-197 |
| Cow position: | chr2:1352378-1352217 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-199 |
| Cow position: | chr2:64292966-64292811 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 12 |
| Conread position: | 43-200 |
| Cow position: | chr2:46227201-46227367 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:33262883-33262715 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:42607804-42607968 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:46357578-46357742 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:52344495-52344657 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:61485369-61485531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:68110010-68109841 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr2:81388423-81388594 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 43-202 |
| Cow position: | chr2:16412111-16412274 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:4254803-4254630 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:31783674-31783841 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 43-203 |
| Cow position: | chr2:41184799-41184965 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:43609359-43609201 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:47116180-47116011 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:53649759-53649932 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:56828835-56828664 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 43-203 |
| Cow position: | chr2:68488276-68488101 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 43-203 |
| Cow position: | chr2:82581198-82581027 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 45-189 |
| Cow position: | chr2:44032797-44032646 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-200 |
| Cow position: | chr2:971578-971738 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 45-201 |
| Cow position: | chr2:14884016-14884186 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 45-201 |
| Cow position: | chr2:34694971-34695143 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr2:53533074-53532906 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-201 |
| Cow position: | chr2:71624643-71624478 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 45-203 |
| Cow position: | chr2:10656104-10655948 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 99 |
| Conread position: | 45-203 |
| Cow position: | chr2:23121024-23120858 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-203 |
| Cow position: | chr2:74260192-74260360 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 46-200 |
| Cow position: | chr2:15298277-15298437 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 46-201 |
| Cow position: | chr2:39500768-39500928 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 46-201 |
| Cow position: | chr2:45575260-45575092 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 46-203 |
| Cow position: | chr2:36056061-36055894 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 47-185 |
| Cow position: | chr2:7193939-7194088 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 47-199 |
| Cow position: | chr2:55877137-55877288 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 96, 8 |
| Conread position: | 47-201 |
| Cow position: | chr2:45499460-45499300 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 48-202 |
| Cow position: | chr2:13001547-13001709 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 48-203 |
| Cow position: | chr2:47877715-47877879 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 50-203 |
| Cow position: | chr2:42872006-42872175 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 53-201 |
| Cow position: | chr2:1658241-1658396 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 54-203 |
| Cow position: | chr2:38628651-38628811 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 54-203 |
| Cow position: | chr2:46995009-46994851 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 55-196 |
| Cow position: | chr2:80800463-80800606 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 75 |
| Conread position: | 56-201 |
| Cow position: | chr2:19212298-19212150 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 56-201 |
| Cow position: | chr2:21002932-21003081 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 56-201 |
| Cow position: | chr2:38747421-38747567 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 56-203 |
| Cow position: | chr2:36423759-36423916 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 57-200 |
| Cow position: | chr2:17444540-17444695 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 57-201 |
| Cow position: | chr2:21284683-21284836 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 57-203 |
| Cow position: | chr2:19287331-19287173 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 58-199 |
| Cow position: | chr2:54883230-54883366 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 103, 61 |
| Conread position: | 63-201 |
| Cow position: | chr2:25964733-25964586 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 73-203 |
| Cow position: | chr2:11599202-11599341 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 133 |
| Conread position: | 87-201 |
| Cow position: | chr2:15329178-15329295 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.