Cow genome map

Conread name: rsag034_i21.y1

Conread position: 1-201
Cow position: chr21:13585302-13585104 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 39

Conread position: 5-201
Cow position: chr21:12801989-12801782 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 5

Conread position: 8-200
Cow position: chr21:29484743-29484943 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 19, 32

Conread position: 11-201
Cow position: chr21:6051271-6051472 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 5

Conread position: 28-200
Cow position: chr21:24598439-24598625 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 33

Conread position: 30-200
Cow position: chr21:12961115-12960935 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 107, 9

Conread position: 38-201
Cow position: chr21:47067098-47066932 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 49

Conread position: 39-200
Cow position: chr21:28907852-28907683 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 21

Conread position: 39-201
Cow position: chr21:9710912-9710740 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 19

Conread position: 39-201
Cow position: chr21:15976436-15976599 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 30

Conread position: 39-201
Cow position: chr21:30990477-30990305 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 5, 22

Conread position: 39-203
Cow position: chr21:11645181-11645003 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 42-201
Cow position: chr21:26244727-26244885 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 99, 24

Conread position: 42-201
Cow position: chr21:38120900-38121066 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 42-203
Cow position: chr21:30849144-30848981 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 99, 15

Conread position: 43-183
Cow position: chr21:27341801-27341657 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 100, 12

Conread position: 43-185
Cow position: chr21:4399595-4399746 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 12

Conread position: 43-185
Cow position: chr21:48484645-48484503 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 12

Conread position: 43-199
Cow position: chr21:2904666-2904510 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 12

Conread position: 43-201
Cow position: chr21:912172-912002 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 43-201
Cow position: chr21:20262538-20262368 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 12

Conread position: 43-201
Cow position: chr21:20925710-20925541 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 98, 12

Conread position: 43-201
Cow position: chr21:34658830-34658999 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 94, 12

Conread position: 43-201
Cow position: chr21:37479752-37479924 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 93, 12

Conread position: 43-201
Cow position: chr21:38691986-38692151 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 38

Conread position: 43-202
Cow position: chr21:16612425-16612591 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 98, 12

Conread position: 43-202
Cow position: chr21:29069532-29069363 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 83, 5

Conread position: 43-203
Cow position: chr21:12616935-12617104 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 100, 12

Conread position: 43-203
Cow position: chr21:23150223-23150054 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 98, 12

Conread position: 44-201
Cow position: chr21:42190368-42190210 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 101, 11

Conread position: 45-185
Cow position: chr21:3236328-3236473 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 37

Conread position: 45-185
Cow position: chr21:46849325-46849177 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 10

Conread position: 45-199
Cow position: chr21:36762849-36763003 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 128

Conread position: 45-200
Cow position: chr21:38900571-38900742 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 10

Conread position: 45-201
Cow position: chr21:395674-395835 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 106, 13

Conread position: 45-201
Cow position: chr21:3585560-3585398 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 22

Conread position: 45-201
Cow position: chr21:24797491-24797652 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 42

Conread position: 45-201
Cow position: chr21:32237095-32237260 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 96, 10

Conread position: 45-201
Cow position: chr21:44826080-44825920 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 19

Conread position: 45-201
Cow position: chr21:47802464-47802292 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 46-193
Cow position: chr21:24130880-24131037 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 83, 9

Conread position: 46-201
Cow position: chr21:23683349-23683513 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 79, 9

Conread position: 46-201
Cow position: chr21:33263646-33263814 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 85

Conread position: 47-199
Cow position: chr21:643137-643291 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 96, 8

Conread position: 47-201
Cow position: chr21:641384-641551 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 83, 11

Conread position: 47-201
Cow position: chr21:44515072-44515229 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 97

Conread position: 48-201
Cow position: chr21:34391169-34391010 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 97, 12

Conread position: 48-201
Cow position: chr21:41957375-41957211 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 49-203
Cow position: chr21:2367142-2367301 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 6

Conread position: 53-201
Cow position: chr21:34653889-34654041 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 30

Conread position: 54-201
Cow position: chr21:8985355-8985512 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 54-201
Cow position: chr21:22860808-22860964 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 27

Conread position: 55-201
Cow position: chr21:10263850-10263998 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 26

Conread position: 56-185
Cow position: chr21:42053457-42053319 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 56-201
Cow position: chr21:10601560-10601409 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 91, 25

Conread position: 57-201
Cow position: chr21:32559545-32559394 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 120

Conread position: 58-201
Cow position: chr21:13365151-13365303 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 63-201
Cow position: chr21:35897810-35897667 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 8

Conread position: 65-203
Cow position: chr21:1510890-1511036 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 67-201
Cow position: chr21:802475-802330 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 74, 0

Conread position: 83-200
Cow position: chr21:27624547-27624673 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 26

Show alignments to all cow chromosomes.