Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 9-201 |
| Cow position: | chr28:8408440-8408641 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 26-201 |
| Cow position: | chr28:24996867-24996682 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 13 |
| Conread position: | 27-200 |
| Cow position: | chr28:32747662-32747831 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 27-203 |
| Cow position: | chr28:26719081-26719259 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 28-201 |
| Cow position: | chr28:19026283-19026105 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 31-201 |
| Cow position: | chr28:5366406-5366221 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 39-201 |
| Cow position: | chr28:8372204-8372381 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 39-201 |
| Cow position: | chr28:16253121-16252953 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 39-203 |
| Cow position: | chr28:14657434-14657610 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 40-201 |
| Cow position: | chr28:11827231-11827400 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 41-201 |
| Cow position: | chr28:5904472-5904639 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 96, 17 |
| Conread position: | 43-183 |
| Cow position: | chr28:10616213-10616075 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 43-188 |
| Cow position: | chr28:26743360-26743512 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-199 |
| Cow position: | chr28:23007990-23007829 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 43-200 |
| Cow position: | chr28:5771104-5771272 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 43-200 |
| Cow position: | chr28:13371430-13371267 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-201 |
| Cow position: | chr28:21598515-21598347 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-203 |
| Cow position: | chr28:3751057-3751226 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-203 |
| Cow position: | chr28:8787288-8787448 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-203 |
| Cow position: | chr28:12430347-12430516 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 43-203 |
| Cow position: | chr28:12964315-12964478 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr28:16879530-16879365 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 44-201 |
| Cow position: | chr28:22279445-22279287 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 45-184 |
| Cow position: | chr28:4308160-4308019 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 45-185 |
| Cow position: | chr28:10642281-10642127 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-200 |
| Cow position: | chr28:10762413-10762565 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 45-201 |
| Cow position: | chr28:661859-662015 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 45-201 |
| Cow position: | chr28:6971601-6971437 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 45-201 |
| Cow position: | chr28:22332288-22332442 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 61 |
| Conread position: | 45-203 |
| Cow position: | chr28:4536208-4536365 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 46-200 |
| Cow position: | chr28:23621289-23621453 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 46-201 |
| Cow position: | chr28:3740593-3740752 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 46-201 |
| Cow position: | chr28:16450954-16450796 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 47-203 |
| Cow position: | chr28:11585466-11585296 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 48-201 |
| Cow position: | chr28:20124528-20124690 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 53-201 |
| Cow position: | chr28:4938585-4938740 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 151 |
| Conread position: | 54-199 |
| Cow position: | chr28:30327333-30327186 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 54-201 |
| Cow position: | chr28:3078930-3078774 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 54-201 |
| Cow position: | chr28:25596380-25596539 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 54-202 |
| Cow position: | chr28:25056719-25056878 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 55-201 |
| Cow position: | chr28:22345768-22345926 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 56-201 |
| Cow position: | chr28:2905330-2905487 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 58-199 |
| Cow position: | chr28:13474058-13474205 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 61-201 |
| Cow position: | chr28:4070724-4070876 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 61-203 |
| Cow position: | chr28:14649102-14649257 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 63-185 |
| Cow position: | chr28:11423047-11422920 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 66-203 |
| Cow position: | chr28:26220021-26220164 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 69-194 |
| Cow position: | chr28:5658317-5658452 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 72-201 |
| Cow position: | chr28:3077759-3077896 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 9 |
Show alignments to all cow chromosomes.