Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 1-199 |
| Cow position: | chr3:4031634-4031846 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 7-201 |
| Cow position: | chr3:39970198-39969990 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 8-200 |
| Cow position: | chr3:66885364-66885157 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 15-201 |
| Cow position: | chr3:27274222-27274409 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 122, 24 |
| Conread position: | 17-201 |
| Cow position: | chr3:19006348-19006541 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 20-203 |
| Cow position: | chr3:9641252-9641445 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 116, 7 |
| Conread position: | 23-203 |
| Cow position: | chr3:17937147-17936955 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 118, 17 |
| Conread position: | 25-200 |
| Cow position: | chr3:75057423-75057251 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 26-201 |
| Cow position: | chr3:56704846-56704666 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 28-201 |
| Cow position: | chr3:15158736-15158919 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 112, 12 |
| Conread position: | 29-203 |
| Cow position: | chr3:58383661-58383848 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 31-188 |
| Cow position: | chr3:55815040-55815206 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 31-202 |
| Cow position: | chr3:15057902-15057728 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 35-201 |
| Cow position: | chr3:50069479-50069642 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 39-193 |
| Cow position: | chr3:78093955-78093800 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 39-201 |
| Cow position: | chr3:28908492-28908324 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 39-201 |
| Cow position: | chr3:45647382-45647558 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 40-201 |
| Cow position: | chr3:10347056-10347233 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 41-201 |
| Cow position: | chr3:70895753-70895928 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 41-201 |
| Cow position: | chr3:73443380-73443209 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 42-185 |
| Cow position: | chr3:14626442-14626296 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 42-201 |
| Cow position: | chr3:18393674-18393510 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 42-201 |
| Cow position: | chr3:65413569-65413402 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 42-201 |
| Cow position: | chr3:70468097-70467929 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 42-201 |
| Cow position: | chr3:75711025-75711189 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 42-203 |
| Cow position: | chr3:2397075-2396899 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 42-203 |
| Cow position: | chr3:23169362-23169186 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 43-200 |
| Cow position: | chr3:54782303-54782140 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 43-200 |
| Cow position: | chr3:68514840-68514682 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 12 |
| Conread position: | 43-201 |
| Cow position: | chr3:210031-210195 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 43-201 |
| Cow position: | chr3:29887715-29887544 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-201 |
| Cow position: | chr3:49218598-49218436 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 43-201 |
| Cow position: | chr3:62623924-62623771 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-203 |
| Cow position: | chr3:72124-72294 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr3:5851218-5851044 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 43-203 |
| Cow position: | chr3:12670984-12670816 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 43-203 |
| Cow position: | chr3:53429182-53429016 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 43-203 |
| Cow position: | chr3:56059516-56059686 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 146 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 45-200 |
| Cow position: | chr3:45881618-45881786 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 45-201 |
| Cow position: | chr3:22676373-22676213 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 45-201 |
| Cow position: | chr3:26903826-26903994 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 94, 10 |
| Conread position: | 45-201 |
| Cow position: | chr3:30179793-30179959 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 10 |
| Conread position: | 45-201 |
| Cow position: | chr3:59596913-59597061 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 45-201 |
| Cow position: | chr3:61191208-61191046 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-202 |
| Cow position: | chr3:59798963-59799126 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-203 |
| Cow position: | chr3:16004277-16004110 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 45-203 |
| Cow position: | chr3:55190041-55189877 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 46-185 |
| Cow position: | chr3:15661989-15661841 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 46-189 |
| Cow position: | chr3:69961999-69961848 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 46-201 |
| Cow position: | chr3:30463454-30463289 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 46-201 |
| Cow position: | chr3:66610126-66609965 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 16 |
| Conread position: | 46-201 |
| Cow position: | chr3:70566026-70565860 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 47-200 |
| Cow position: | chr3:37186547-37186707 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 47-201 |
| Cow position: | chr3:26894381-26894539 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 47-201 |
| Cow position: | chr3:75479723-75479880 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 48-195 |
| Cow position: | chr3:21302717-21302559 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 49-201 |
| Cow position: | chr3:61840004-61840154 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 54-189 |
| Cow position: | chr3:60892352-60892498 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 55-197 |
| Cow position: | chr3:75158085-75158233 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 55-200 |
| Cow position: | chr3:17222424-17222267 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 55-200 |
| Cow position: | chr3:38863833-38863992 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 55-201 |
| Cow position: | chr3:74409215-74409360 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 89, 26 |
| Conread position: | 55-203 |
| Cow position: | chr3:81371376-81371527 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 56-201 |
| Cow position: | chr3:42483621-42483779 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 56-201 |
| Cow position: | chr3:61262524-61262681 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 57-201 |
| Cow position: | chr3:9116629-9116781 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 57-203 |
| Cow position: | chr3:32584880-32585033 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 57-203 |
| Cow position: | chr3:68627953-68627801 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 58-201 |
| Cow position: | chr3:23408619-23408474 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 61-196 |
| Cow position: | chr3:6853774-6853634 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 62-199 |
| Cow position: | chr3:525081-525226 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 65-201 |
| Cow position: | chr3:70899630-70899773 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 70-201 |
| Cow position: | chr3:60597283-60597421 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 87-201 |
| Cow position: | chr3:22924646-22924530 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 96-201 |
| Cow position: | chr3:22232882-22232774 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.