Cow genome map

Conread name: rsag034_i21.y1

Conread position: 1-199
Cow position: chr3:4031634-4031846 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 38

Conread position: 7-201
Cow position: chr3:39970198-39969990 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 20, 9

Conread position: 8-200
Cow position: chr3:66885364-66885157 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 19

Conread position: 15-201
Cow position: chr3:27274222-27274409 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 122, 24

Conread position: 17-201
Cow position: chr3:19006348-19006541 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 23

Conread position: 20-203
Cow position: chr3:9641252-9641445 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 116, 7

Conread position: 23-203
Cow position: chr3:17937147-17936955 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 118, 17

Conread position: 25-200
Cow position: chr3:75057423-75057251 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 109, 19

Conread position: 26-201
Cow position: chr3:56704846-56704666 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 30

Conread position: 28-201
Cow position: chr3:15158736-15158919 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 112, 12

Conread position: 29-203
Cow position: chr3:58383661-58383848 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 17

Conread position: 31-188
Cow position: chr3:55815040-55815206 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 9

Conread position: 31-202
Cow position: chr3:15057902-15057728 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 8

Conread position: 35-201
Cow position: chr3:50069479-50069642 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 20, 26

Conread position: 39-193
Cow position: chr3:78093955-78093800 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 16

Conread position: 39-201
Cow position: chr3:28908492-28908324 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 39-201
Cow position: chr3:45647382-45647558 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 16

Conread position: 40-201
Cow position: chr3:10347056-10347233 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 41-201
Cow position: chr3:70895753-70895928 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 100, 14

Conread position: 41-201
Cow position: chr3:73443380-73443209 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 100, 14

Conread position: 42-185
Cow position: chr3:14626442-14626296 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 101, 13

Conread position: 42-201
Cow position: chr3:18393674-18393510 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 28

Conread position: 42-201
Cow position: chr3:65413569-65413402 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 40

Conread position: 42-201
Cow position: chr3:70468097-70467929 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 40

Conread position: 42-201
Cow position: chr3:75711025-75711189 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 40

Conread position: 42-203
Cow position: chr3:2397075-2396899 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 97, 13

Conread position: 42-203
Cow position: chr3:23169362-23169186 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 99, 13

Conread position: 43-200
Cow position: chr3:54782303-54782140 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 14

Conread position: 43-200
Cow position: chr3:68514840-68514682 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 116, 12

Conread position: 43-201
Cow position: chr3:210031-210195 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 12

Conread position: 43-201
Cow position: chr3:29887715-29887544 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 94, 12

Conread position: 43-201
Cow position: chr3:49218598-49218436 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 12

Conread position: 43-201
Cow position: chr3:62623924-62623771 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 43-203
Cow position: chr3:72124-72294 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 12

Conread position: 43-203
Cow position: chr3:5851218-5851044 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 12

Conread position: 43-203
Cow position: chr3:12670984-12670816 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 35, 12

Conread position: 43-203
Cow position: chr3:53429182-53429016 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 36, 12

Conread position: 43-203
Cow position: chr3:56059516-56059686 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 146
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 12

Conread position: 45-200
Cow position: chr3:45881618-45881786 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 45-201
Cow position: chr3:22676373-22676213 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 64

Conread position: 45-201
Cow position: chr3:26903826-26903994 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 134
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 10

Conread position: 45-201
Cow position: chr3:30179793-30179959 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 10

Conread position: 45-201
Cow position: chr3:59596913-59597061 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 65

Conread position: 45-201
Cow position: chr3:61191208-61191046 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 45-202
Cow position: chr3:59798963-59799126 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 45-203
Cow position: chr3:16004277-16004110 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 0

Conread position: 45-203
Cow position: chr3:55190041-55189877 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 37

Conread position: 46-185
Cow position: chr3:15661989-15661841 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 7

Conread position: 46-189
Cow position: chr3:69961999-69961848 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 95, 9

Conread position: 46-201
Cow position: chr3:30463454-30463289 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 91, 11

Conread position: 46-201
Cow position: chr3:66610126-66609965 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 99, 16

Conread position: 46-201
Cow position: chr3:70566026-70565860 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 97, 9

Conread position: 47-200
Cow position: chr3:37186547-37186707 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 40

Conread position: 47-201
Cow position: chr3:26894381-26894539 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 8

Conread position: 47-201
Cow position: chr3:75479723-75479880 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 48-195
Cow position: chr3:21302717-21302559 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 7

Conread position: 49-201
Cow position: chr3:61840004-61840154 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 6, 0

Conread position: 54-189
Cow position: chr3:60892352-60892498 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 84, 17

Conread position: 55-197
Cow position: chr3:75158085-75158233 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 55-200
Cow position: chr3:17222424-17222267 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 0

Conread position: 55-200
Cow position: chr3:38863833-38863992 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 55-201
Cow position: chr3:74409215-74409360 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 89, 26

Conread position: 55-203
Cow position: chr3:81371376-81371527 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 126
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 56-201
Cow position: chr3:42483621-42483779 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 56-201
Cow position: chr3:61262524-61262681 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 57-201
Cow position: chr3:9116629-9116781 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 24

Conread position: 57-203
Cow position: chr3:32584880-32585033 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 57-203
Cow position: chr3:68627953-68627801 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 58-201
Cow position: chr3:23408619-23408474 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 23

Conread position: 61-196
Cow position: chr3:6853774-6853634 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 22

Conread position: 62-199
Cow position: chr3:525081-525226 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 65-201
Cow position: chr3:70899630-70899773 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 64, 104

Conread position: 70-201
Cow position: chr3:60597283-60597421 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 87-201
Cow position: chr3:22924646-22924530 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 27

Conread position: 96-201
Cow position: chr3:22232882-22232774 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.