Cow genome map

Conread name: rsag034_i21.y1

Conread position: 1-201
Cow position: chr4:5461170-5460966 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 39

Conread position: 7-197
Cow position: chr4:47348523-47348717 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 5

Conread position: 16-200
Cow position: chr4:63349776-63349582 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 11

Conread position: 16-201
Cow position: chr4:41867142-41867338 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 24

Conread position: 21-194
Cow position: chr4:48499552-48499726 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 122, 20

Conread position: 21-200
Cow position: chr4:52748754-52748565 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 154
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 120, 18

Conread position: 21-201
Cow position: chr4:51783880-51784072 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 15, 37

Conread position: 27-185
Cow position: chr4:54930708-54930547 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 13

Conread position: 27-201
Cow position: chr4:8801212-8801395 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 170

Conread position: 27-201
Cow position: chr4:34630610-34630787 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 112, 54

Conread position: 27-201
Cow position: chr4:51739995-51739815 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 13

Conread position: 27-203
Cow position: chr4:27292250-27292060 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 101, 28

Conread position: 28-201
Cow position: chr4:44073061-44072872 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 13

Conread position: 31-200
Cow position: chr4:27529827-27530010 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 9

Conread position: 32-201
Cow position: chr4:13832887-13832710 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 74, 8

Conread position: 33-199
Cow position: chr4:4084732-4084556 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 6

Conread position: 35-199
Cow position: chr4:54190817-54190980 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 104, 20

Conread position: 39-201
Cow position: chr4:8947125-8947287 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 124, 16

Conread position: 40-187
Cow position: chr4:56240123-56239970 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 103, 15

Conread position: 42-200
Cow position: chr4:21874556-21874709 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 18

Conread position: 42-203
Cow position: chr4:24458373-24458203 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 101, 15

Conread position: 43-182
Cow position: chr4:28377924-28377778 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 83, 12

Conread position: 43-185
Cow position: chr4:4736762-4736906 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 39

Conread position: 43-185
Cow position: chr4:47773907-47773758 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 12

Conread position: 43-188
Cow position: chr4:18255589-18255737 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 94, 14

Conread position: 43-194
Cow position: chr4:33971172-33971011 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 12

Conread position: 43-200
Cow position: chr4:30574181-30574344 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 98, 12

Conread position: 43-201
Cow position: chr4:19434986-19435153 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 12

Conread position: 43-201
Cow position: chr4:33097237-33097082 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 120, 9

Conread position: 43-201
Cow position: chr4:37915604-37915444 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 101, 12

Conread position: 43-201
Cow position: chr4:40414906-40414734 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 83, 12

Conread position: 43-201
Cow position: chr4:45662775-45662615 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 12

Conread position: 43-201
Cow position: chr4:46274918-46275086 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 95, 12

Conread position: 43-201
Cow position: chr4:51727808-51727970 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 12

Conread position: 43-203
Cow position: chr4:27540346-27540517 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 141
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 83, 15

Conread position: 43-203
Cow position: chr4:66112352-66112177 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 12

Conread position: 44-199
Cow position: chr4:16602325-16602161 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 92, 11

Conread position: 44-199
Cow position: chr4:59871224-59871377 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 11

Conread position: 44-203
Cow position: chr4:3687654-3687819 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 11

Conread position: 44-203
Cow position: chr4:19097018-19097185 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 97, 11

Conread position: 45-194
Cow position: chr4:53134338-53134496 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 10

Conread position: 45-200
Cow position: chr4:29237425-29237265 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 61

Conread position: 45-201
Cow position: chr4:23853929-23854090 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 122

Conread position: 45-201
Cow position: chr4:49629224-49629377 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 45-203
Cow position: chr4:37703991-37704162 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 10, 37

Conread position: 46-201
Cow position: chr4:480279-480111 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 9

Conread position: 46-201
Cow position: chr4:62471796-62471966 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 95, 9

Conread position: 46-203
Cow position: chr4:17112149-17111981 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 92, 9

Conread position: 46-203
Cow position: chr4:19497522-19497356 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 9

Conread position: 46-203
Cow position: chr4:48485721-48485900 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 9

Conread position: 47-200
Cow position: chr4:33433531-33433371 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 8, 35

Conread position: 47-201
Cow position: chr4:19597584-19597422 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 10

Conread position: 47-201
Cow position: chr4:49992813-49992972 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 129

Conread position: 47-203
Cow position: chr4:8413381-8413224 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 81, 8

Conread position: 47-203
Cow position: chr4:22072946-22072774 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 48-200
Cow position: chr4:21392074-21391920 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 78, 7

Conread position: 48-201
Cow position: chr4:56233421-56233581 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 7

Conread position: 48-203
Cow position: chr4:14470840-14470674 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 7, 39

Conread position: 49-203
Cow position: chr4:31136486-31136647 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 6

Conread position: 50-201
Cow position: chr4:2141476-2141639 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 32

Conread position: 53-203
Cow position: chr4:14505266-14505120 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 110

Conread position: 53-203
Cow position: chr4:33612629-33612463 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 54-201
Cow position: chr4:23847316-23847154 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 56-201
Cow position: chr4:10471960-10472117 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 70, 0

Conread position: 56-201
Cow position: chr4:65919355-65919507 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 87, 25

Conread position: 57-199
Cow position: chr4:43909490-43909635 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 58-201
Cow position: chr4:1985388-1985537 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 59-194
Cow position: chr4:61066392-61066536 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 60-201
Cow position: chr4:2536574-2536725 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 31

Conread position: 62-201
Cow position: chr4:25983970-25984120 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 63-202
Cow position: chr4:42922102-42921956 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 80, 0

Conread position: 64-201
Cow position: chr4:40410375-40410227 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 72-201
Cow position: chr4:21233118-21232980 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 72-201
Cow position: chr4:29291275-29291413 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 64, 0

Conread position: 73-201
Cow position: chr4:21531887-21531750 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 44

Show alignments to all cow chromosomes.