Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 1-201 |
| Cow position: | chr5:25495622-25495424 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 2-203 |
| Cow position: | chr5:25035515-25035314 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 58 |
| Conread position: | 2-203 |
| Cow position: | chr5:57626520-57626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 5-193 |
| Cow position: | chr5:1779542-1779352 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 15-185 |
| Cow position: | chr5:9498116-9498294 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 15-199 |
| Cow position: | chr5:66296965-66297163 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 16-201 |
| Cow position: | chr5:42744526-42744715 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 19-201 |
| Cow position: | chr5:4032254-4032065 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 114, 21 |
| Conread position: | 19-201 |
| Cow position: | chr5:24837212-24837019 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 21-194 |
| Cow position: | chr5:34923372-34923193 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 26-188 |
| Cow position: | chr5:41636612-41636784 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 26-201 |
| Cow position: | chr5:31785991-31786176 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 27-201 |
| Cow position: | chr5:37814364-37814549 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 33-201 |
| Cow position: | chr5:34115411-34115577 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 39-185 |
| Cow position: | chr5:54350609-54350457 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 39-193 |
| Cow position: | chr5:39419031-39418866 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 39-193 |
| Cow position: | chr5:47601569-47601738 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 39-201 |
| Cow position: | chr5:37377630-37377795 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 39-203 |
| Cow position: | chr5:20779625-20779457 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 40-201 |
| Cow position: | chr5:40109254-40109426 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 40-203 |
| Cow position: | chr5:20407911-20407738 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 43 |
| Conread position: | 42-203 |
| Cow position: | chr5:39447775-39447601 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 42-203 |
| Cow position: | chr5:52645321-52645150 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 43-201 |
| Cow position: | chr5:3491959-3492122 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 43-201 |
| Cow position: | chr5:21828622-21828793 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr5:34528319-34528489 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-201 |
| Cow position: | chr5:34638643-34638811 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 83, 12 |
| Conread position: | 43-201 |
| Cow position: | chr5:43474605-43474774 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-202 |
| Cow position: | chr5:50950311-50950482 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:6045044-6045220 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:9894369-9894200 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:12352024-12351859 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:17087272-17087096 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:29827811-29827978 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 43-203 |
| Cow position: | chr5:34915900-34916068 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 44-198 |
| Cow position: | chr5:62826994-62826830 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 44-199 |
| Cow position: | chr5:21617214-21617383 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 44-201 |
| Cow position: | chr5:44583361-44583201 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 45-185 |
| Cow position: | chr5:4347953-4347818 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 45-189 |
| Cow position: | chr5:19969274-19969113 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 45-199 |
| Cow position: | chr5:35763048-35763200 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 45-199 |
| Cow position: | chr5:56523932-56524100 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 37 |
| Conread position: | 45-201 |
| Cow position: | chr5:66257402-66257566 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 46-201 |
| Cow position: | chr5:4218638-4218801 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 93, 9 |
| Conread position: | 47-201 |
| Cow position: | chr5:19278931-19278773 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 47-203 |
| Cow position: | chr5:60519928-60520091 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 54-200 |
| Cow position: | chr5:72045873-72045720 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 54-200 |
| Cow position: | chr5:74643893-74643745 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 54-201 |
| Cow position: | chr5:29353361-29353201 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 27 |
| Conread position: | 54-201 |
| Cow position: | chr5:36854980-36855132 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 55-200 |
| Cow position: | chr5:30302667-30302819 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 55-201 |
| Cow position: | chr5:5111308-5111148 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 56-201 |
| Cow position: | chr5:50821558-50821709 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 77 |
| Conread position: | 56-201 |
| Cow position: | chr5:62172188-62172343 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 60-203 |
| Cow position: | chr5:12672253-12672101 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 63-203 |
| Cow position: | chr5:5848410-5848261 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 65-201 |
| Cow position: | chr5:15722275-15722139 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 97-203 |
| Cow position: | chr5:7755742-7755633 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.