Cow genome map
| Conread name: | rsag034_i21.y1 |
| Conread position: | 1-201 |
| Cow position: | chr6:45160557-45160353 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 142, 33 |
| Conread position: | 7-201 |
| Cow position: | chr6:4383228-4383427 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 19-201 |
| Cow position: | chr6:37148944-37149129 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 22-203 |
| Cow position: | chr6:35613661-35613471 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 26-200 |
| Cow position: | chr6:36202584-36202768 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 26-201 |
| Cow position: | chr6:9322913-9323102 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 27-200 |
| Cow position: | chr6:21869888-21869708 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 27-200 |
| Cow position: | chr6:66874117-66874290 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 33-201 |
| Cow position: | chr6:66532042-66531880 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 35-203 |
| Cow position: | chr6:49410916-49410748 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 39-197 |
| Cow position: | chr6:37053781-37053937 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 39-200 |
| Cow position: | chr6:388939-389110 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 39-201 |
| Cow position: | chr6:130397-130220 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 39-201 |
| Cow position: | chr6:53460805-53460631 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 39-201 |
| Cow position: | chr6:67950727-67950894 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 40-188 |
| Cow position: | chr6:9453877-9454030 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 42-200 |
| Cow position: | chr6:5609672-5609500 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 42-201 |
| Cow position: | chr6:32210855-32210687 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 42-203 |
| Cow position: | chr6:20098193-20098021 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 43-178 |
| Cow position: | chr6:1866456-1866590 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 43-189 |
| Cow position: | chr6:24468620-24468464 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 43-190 |
| Cow position: | chr6:40138933-40138782 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 43-197 |
| Cow position: | chr6:60467800-60467961 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:1002462-1002292 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:8209817-8209650 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:15242608-15242777 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:23695770-23695935 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 43-201 |
| Cow position: | chr6:32121683-32121852 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:34196376-34196209 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 43-201 |
| Cow position: | chr6:40031966-40032134 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 43-203 |
| Cow position: | chr6:2012791-2012962 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr6:13688039-13687870 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 43-203 |
| Cow position: | chr6:15305358-15305524 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 100, 12 |
| Conread position: | 43-203 |
| Cow position: | chr6:54132590-54132760 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 43-203 |
| Cow position: | chr6:61269102-61269253 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 44-188 |
| Cow position: | chr6:9026288-9026445 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 44-201 |
| Cow position: | chr6:10649245-10649083 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 75, 11 |
| Conread position: | 44-201 |
| Cow position: | chr6:18987990-18988154 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 44-201 |
| Cow position: | chr6:21542093-21542261 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 45-201 |
| Cow position: | chr6:20231053-20230887 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 45-203 |
| Cow position: | chr6:46570892-46571060 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 46-201 |
| Cow position: | chr6:49398841-49398673 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 9 |
| Conread position: | 46-203 |
| Cow position: | chr6:7131096-7130937 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 47-201 |
| Cow position: | chr6:6063503-6063349 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 8 |
| Conread position: | 47-201 |
| Cow position: | chr6:57685933-57686099 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 47-203 |
| Cow position: | chr6:36195988-36196157 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 53-201 |
| Cow position: | chr6:15923216-15923058 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 53-203 |
| Cow position: | chr6:56842941-56843098 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 54-200 |
| Cow position: | chr6:34031450-34031603 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 54-201 |
| Cow position: | chr6:8804745-8804589 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 54-201 |
| Cow position: | chr6:10635959-10636112 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 55-194 |
| Cow position: | chr6:17669093-17669229 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 58-199 |
| Cow position: | chr6:28476968-28477117 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 59-201 |
| Cow position: | chr6:38771083-38771227 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 65-199 |
| Cow position: | chr6:31928066-31928205 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 66-200 |
| Cow position: | chr6:38641292-38641434 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 71-201 |
| Cow position: | chr6:21231335-21231472 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.