Cow genome map

Conread name: rsag034_i21.y1

Conread position: 1-194
Cow position: chrX:9635472-9635260 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 1-200
Cow position: chrX:4768467-4768670 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 26

Conread position: 1-201
Cow position: chrX:9416982-9416765 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 1-201
Cow position: chrX:21672268-21672484 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 40

Conread position: 4-203
Cow position: chrX:33493491-33493707 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 23, 80

Conread position: 17-200
Cow position: chrX:23970124-23970311 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 124, 10

Conread position: 17-201
Cow position: chrX:39558613-39558422 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 5

Conread position: 17-202
Cow position: chrX:7513245-7513443 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 11, 72

Conread position: 20-188
Cow position: chrX:13912814-13912994 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 36

Conread position: 26-199
Cow position: chrX:17662852-17662667 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 115, 13

Conread position: 27-199
Cow position: chrX:43567681-43567848 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 29, 13

Conread position: 27-201
Cow position: chrX:23514276-23514087 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 13

Conread position: 27-201
Cow position: chrX:34543529-34543716 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 13

Conread position: 33-200
Cow position: chrX:26876131-26875956 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 110, 7

Conread position: 33-201
Cow position: chrX:877273-877098 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 104, 17

Conread position: 35-201
Cow position: chrX:41743664-41743840 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 20

Conread position: 39-199
Cow position: chrX:24424634-24424462 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 39-200
Cow position: chrX:12249560-12249730 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 16

Conread position: 39-201
Cow position: chrX:27680156-27680327 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 16, 45

Conread position: 40-200
Cow position: chrX:619254-619077 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 42-194
Cow position: chrX:46990026-46989869 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 101, 13

Conread position: 43-185
Cow position: chrX:33803254-33803097 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 12

Conread position: 43-190
Cow position: chrX:28847120-28846965 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 94, 17

Conread position: 43-197
Cow position: chrX:17725737-17725898 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 98, 14

Conread position: 43-200
Cow position: chrX:35413389-35413547 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 12, 101

Conread position: 43-201
Cow position: chrX:7646017-7646184 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 12

Conread position: 43-201
Cow position: chrX:7695520-7695677 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 118, 12

Conread position: 43-201
Cow position: chrX:17497855-17498013 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 111, 12

Conread position: 43-201
Cow position: chrX:18695162-18694996 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 12

Conread position: 43-201
Cow position: chrX:19015201-19015366 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 96, 14

Conread position: 43-201
Cow position: chrX:23497904-23497740 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 93, 12

Conread position: 43-201
Cow position: chrX:28878403-28878241 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 12

Conread position: 43-201
Cow position: chrX:34401756-34401926 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 17

Conread position: 43-201
Cow position: chrX:35268649-35268810 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 12

Conread position: 43-201
Cow position: chrX:38967409-38967576 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 94, 12

Conread position: 43-201
Cow position: chrX:45430259-45430088 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 43-203
Cow position: chrX:22482930-22482756 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 12

Conread position: 43-203
Cow position: chrX:34532290-34532451 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 12

Conread position: 43-203
Cow position: chrX:34990800-34990965 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 104, 12

Conread position: 43-203
Cow position: chrX:45414541-45414370 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 12

Conread position: 44-188
Cow position: chrX:19930415-19930570 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 37

Conread position: 44-189
Cow position: chrX:29049728-29049880 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 14, 38

Conread position: 44-192
Cow position: chrX:31294782-31294638 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 119, 11

Conread position: 44-198
Cow position: chrX:17888646-17888489 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 94, 11

Conread position: 44-201
Cow position: chrX:9997573-9997407 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 97, 11

Conread position: 45-185
Cow position: chrX:25283385-25283238 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 10

Conread position: 45-200
Cow position: chrX:12437480-12437325 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 10, 37

Conread position: 45-201
Cow position: chrX:8925464-8925629 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 10

Conread position: 45-201
Cow position: chrX:20582789-20582956 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 45-201
Cow position: chrX:31436239-31436406 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 45-201
Cow position: chrX:38094766-38094593 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 37

Conread position: 45-203
Cow position: chrX:6544015-6544186 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 46-196
Cow position: chrX:15147424-15147266 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 9

Conread position: 46-199
Cow position: chrX:13648022-13647859 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 7

Conread position: 46-201
Cow position: chrX:28866230-28866071 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 83, 9

Conread position: 46-203
Cow position: chrX:5118723-5118572 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 46-203
Cow position: chrX:11939162-11938997 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 92, 9

Conread position: 46-203
Cow position: chrX:35388145-35387972 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 9

Conread position: 47-201
Cow position: chrX:41122835-41122996 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 8

Conread position: 47-201
Cow position: chrX:45113391-45113547 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 96, 8

Conread position: 47-203
Cow position: chrX:34192439-34192603 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 91, 61

Conread position: 49-200
Cow position: chrX:28097888-28098045 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 33

Conread position: 54-194
Cow position: chrX:42470168-42470020 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 123
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 54-203
Cow position: chrX:37910222-37910376 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 14

Conread position: 55-201
Cow position: chrX:37489500-37489656 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 56-185
Cow position: chrX:45787425-45787563 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 56-199
Cow position: chrX:13265849-13265697 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 83, 0

Conread position: 59-201
Cow position: chrX:4942976-4942826 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 59-203
Cow position: chrX:22074574-22074730 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 60-203
Cow position: chrX:4750523-4750374 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 79, 21

Conread position: 64-203
Cow position: chrX:37574635-37574781 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 108

Conread position: 65-189
Cow position: chrX:23091661-23091797 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 0

Conread position: 74-203
Cow position: chrX:29542430-29542289 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.