Cow genome map

Conread name: rsag15_c7.y1

Conread position: 9-351
Cow position: chr10:47908399-47908748 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 33

Conread position: 14-465
Cow position: chr10:46196519-46196989 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 25

Conread position: 17-479
Cow position: chr10:29011207-29010732 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 271

Conread position: 18-165
Cow position: chr10:36512044-36512200 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 18-207
Cow position: chr10:50136030-50136225 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 119
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 18-230
Cow position: chr10:53320931-53320715 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 114

Conread position: 18-389
Cow position: chr10:56394567-56394178 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 257
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 69, 47

Conread position: 18-464
Cow position: chr10:38343895-38343427 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 18-477
Cow position: chr10:41634872-41635336 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 20

Conread position: 18-478
Cow position: chr10:19706167-19705678 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 75

Conread position: 18-478
Cow position: chr10:41878385-41878877 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 18-479
Cow position: chr10:16478212-16478687 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 48

Conread position: 18-481
Cow position: chr10:41387510-41387031 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 47

Conread position: 19-147
Cow position: chr10:28643003-28643141 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 19-231
Cow position: chr10:39181259-39181485 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 52, 0

Conread position: 19-234
Cow position: chr10:20382563-20382343 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 52, 20

Conread position: 19-283
Cow position: chr10:47788143-47788427 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 45, 19

Conread position: 19-288
Cow position: chr10:10583585-10583879 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 0

Conread position: 19-299
Cow position: chr10:11822212-11822517 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 19-306
Cow position: chr10:20537831-20538126 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 64, 119

Conread position: 19-356
Cow position: chr10:44708148-44707791 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 274

Conread position: 19-368
Cow position: chr10:68160174-68159802 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 288

Conread position: 19-449
Cow position: chr10:38544427-38543987 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 295

Conread position: 19-468
Cow position: chr10:37771348-37771821 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 375

Conread position: 19-475
Cow position: chr10:20369636-20369185 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 52

Conread position: 19-475
Cow position: chr10:29845189-29844708 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 95

Conread position: 19-475
Cow position: chr10:46192609-46193091 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 52

Conread position: 19-478
Cow position: chr10:29101262-29100772 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-478
Cow position: chr10:39439615-39440105 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 19-479
Cow position: chr10:7897019-7896527 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr10:14334371-14333893 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 109

Conread position: 19-479
Cow position: chr10:19841142-19841633 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr10:21488421-21488898 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 363

Conread position: 19-479
Cow position: chr10:22102701-22103184 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 23

Conread position: 19-479
Cow position: chr10:28255953-28255455 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 458

Conread position: 19-479
Cow position: chr10:30684029-30683537 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr10:33870748-33871240 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 436

Conread position: 19-479
Cow position: chr10:39039831-39039362 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 19

Conread position: 19-479
Cow position: chr10:39814935-39814446 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 395

Conread position: 19-479
Cow position: chr10:41568564-41569055 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr10:55094729-55095218 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 19-479
Cow position: chr10:57555872-57555386 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 407

Conread position: 19-479
Cow position: chr10:57988531-57988057 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 376

Conread position: 19-479
Cow position: chr10:62407314-62406814 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 19-480
Cow position: chr10:8291510-8291995 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 271

Conread position: 19-480
Cow position: chr10:16927126-16927625 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 297

Conread position: 19-480
Cow position: chr10:25339569-25340051 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 68

Conread position: 19-480
Cow position: chr10:39778658-39778178 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 55

Conread position: 19-482
Cow position: chr10:14805309-14805806 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 297

Conread position: 19-482
Cow position: chr10:19494826-19494332 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-482
Cow position: chr10:25651966-25651472 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-482
Cow position: chr10:28946939-28947414 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 75

Conread position: 19-482
Cow position: chr10:29631335-29630842 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 153

Conread position: 20-474
Cow position: chr10:29722588-29722105 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 162

Conread position: 20-478
Cow position: chr10:22346423-22346912 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 210

Conread position: 20-479
Cow position: chr10:1378960-1379450 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 20-479
Cow position: chr10:21739291-21738801 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 20-479
Cow position: chr10:22908999-22908516 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 444

Conread position: 20-479
Cow position: chr10:39877954-39877477 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 330

Conread position: 20-481
Cow position: chr10:21517510-21517058 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 22

Conread position: 21-213
Cow position: chr10:25250582-25250778 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 127, 61

Conread position: 21-480
Cow position: chr10:10172200-10172690 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 21-482
Cow position: chr10:58376840-58376347 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 418

Conread position: 23-268
Cow position: chr10:22575680-22575436 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 15

Conread position: 23-344
Cow position: chr10:32317248-32317586 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 52

Conread position: 23-478
Cow position: chr10:14853325-14853792 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 317
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 85, 193

Conread position: 24-479
Cow position: chr10:2119537-2119078 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 335

Conread position: 26-479
Cow position: chr10:24976329-24975890 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 308
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 91, 62

Conread position: 27-220
Cow position: chr10:5256594-5256387 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 0

Conread position: 29-479
Cow position: chr10:54930736-54930270 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 314

Conread position: 32-231
Cow position: chr10:38722575-38722779 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 129

Conread position: 34-476
Cow position: chr10:48397626-48397165 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 286

Conread position: 34-479
Cow position: chr10:38849755-38850216 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 47

Conread position: 37-363
Cow position: chr10:21884260-21884612 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 251

Conread position: 38-368
Cow position: chr10:46183934-46184283 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 70

Conread position: 38-478
Cow position: chr10:29109504-29109033 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 37

Conread position: 40-357
Cow position: chr10:7280626-7280278 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 42-478
Cow position: chr10:31525223-31525681 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 48-480
Cow position: chr10:22644493-22644954 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 148

Conread position: 63-478
Cow position: chr10:17433877-17434302 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 118

Conread position: 63-479
Cow position: chr10:32702266-32702710 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 63-479
Cow position: chr10:41158923-41159367 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 63-480
Cow position: chr10:23409729-23409295 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 64-251
Cow position: chr10:39444767-39444572 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 23, 8

Conread position: 65-479
Cow position: chr10:42114039-42114460 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 218

Conread position: 75-312
Cow position: chr10:58598038-58598294 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 16, 118

Conread position: 86-478
Cow position: chr10:19143079-19142663 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 86-482
Cow position: chr10:41151197-41150776 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 87-482
Cow position: chr10:8325564-8325156 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 64

Conread position: 88-368
Cow position: chr10:22619539-22619254 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 66, 47

Conread position: 91-407
Cow position: chr10:40418677-40419006 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 232
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 14

Conread position: 91-474
Cow position: chr10:31539674-31540069 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 209

Conread position: 92-277
Cow position: chr10:19513160-19513350 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 92-479
Cow position: chr10:21898585-21898178 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 39

Conread position: 96-389
Cow position: chr10:40150638-40150334 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 239
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 18, 91

Conread position: 100-480
Cow position: chr10:34666179-34665786 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 41

Conread position: 108-478
Cow position: chr10:22343039-22343417 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 132

Conread position: 113-478
Cow position: chr10:29732308-29732692 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 290

Conread position: 122-453
Cow position: chr10:32828449-32828804 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 129-468
Cow position: chr10:20515016-20515381 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 134-478
Cow position: chr10:40822814-40822457 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 230
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 274

Conread position: 141-297
Cow position: chr10:20374967-20374798 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 159-479
Cow position: chr10:6556150-6556486 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 176

Conread position: 181-479
Cow position: chr10:39209391-39209703 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 151

Show alignments to all cow chromosomes.