Cow genome map
| Conread name: | rsag15_c7.y1 |
| Conread position: | 3-479 |
| Cow position: | chr12:21428205-21427712 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 4-479 |
| Cow position: | chr12:28005259-28005751 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 195 |
| Conread position: | 19-215 |
| Cow position: | chr12:20843994-20844191 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 129, 29 |
| Conread position: | 19-224 |
| Cow position: | chr12:21199380-21199589 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 19-228 |
| Cow position: | chr12:34174507-34174730 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-243 |
| Cow position: | chr12:53962-53727 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 19-339 |
| Cow position: | chr12:21943126-21943473 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 238 |
| Conread position: | 19-407 |
| Cow position: | chr12:24994573-24994154 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-460 |
| Cow position: | chr12:19222381-19222831 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 19-468 |
| Cow position: | chr12:1403892-1404380 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 156 |
| Conread position: | 19-473 |
| Cow position: | chr12:21092322-21091856 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 19-475 |
| Cow position: | chr12:20996696-20996225 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 336 |
| Conread position: | 19-478 |
| Cow position: | chr12:14660960-14660473 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 407 |
| Conread position: | 19-479 |
| Cow position: | chr12:3362331-3362813 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 19-479 |
| Cow position: | chr12:11099616-11100117 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 19-479 |
| Cow position: | chr12:21210054-21210545 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 19-479 |
| Cow position: | chr12:21429398-21429889 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr12:22568365-22567877 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 19-479 |
| Cow position: | chr12:37560402-37560884 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 274 |
| Conread position: | 19-479 |
| Cow position: | chr12:42858146-42857656 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 308 |
| Conread position: | 19-480 |
| Cow position: | chr12:17967202-17967684 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 281 |
| Conread position: | 19-480 |
| Cow position: | chr12:22204322-22203834 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 306 |
| Conread position: | 19-480 |
| Cow position: | chr12:48471492-48471016 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 19-481 |
| Cow position: | chr12:27931519-27931027 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 439 |
| Conread position: | 19-482 |
| Cow position: | chr12:8676709-8676206 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-482 |
| Cow position: | chr12:35345927-35346405 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 300 |
| Conread position: | 20-375 |
| Cow position: | chr12:32677592-32677229 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 20-468 |
| Cow position: | chr12:1888168-1887699 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 20-479 |
| Cow position: | chr12:6405243-6404758 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 20-479 |
| Cow position: | chr12:24433693-24433206 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 295 |
| Conread position: | 20-479 |
| Cow position: | chr12:27854572-27854084 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 20-479 |
| Cow position: | chr12:42606857-42606370 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 20-482 |
| Cow position: | chr12:1776566-1776070 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 21-478 |
| Cow position: | chr12:32654948-32655429 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 426 |
| Conread position: | 21-480 |
| Cow position: | chr12:19870298-19870762 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 30-479 |
| Cow position: | chr12:21482516-21482967 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 65-468 |
| Cow position: | chr12:30685184-30685601 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 65-481 |
| Cow position: | chr12:25262067-25261638 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 203 |
| Conread position: | 86-366 |
| Cow position: | chr12:43913302-43913600 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 275 |
| Conread position: | 86-479 |
| Cow position: | chr12:20461766-20461352 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 86-479 |
| Cow position: | chr12:34174806-34175224 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 86-481 |
| Cow position: | chr12:21253122-21252703 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 281 |
| Conread position: | 88-368 |
| Cow position: | chr12:23140709-23140406 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 88-477 |
| Cow position: | chr12:3209443-3209846 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 88-479 |
| Cow position: | chr12:25098997-25098598 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 112-445 |
| Cow position: | chr12:33042853-33043198 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 202 |
| Conread position: | 119-473 |
| Cow position: | chr12:15950307-15949932 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 190 |
| Conread position: | 131-477 |
| Cow position: | chr12:756699-757051 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 147-299 |
| Cow position: | chr12:11581532-11581695 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 148-478 |
| Cow position: | chr12:22519448-22519101 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 174-475 |
| Cow position: | chr12:43054896-43054591 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 59, 80 |
Show alignments to all cow chromosomes.