Cow genome map
| Conread name: | rsag15_c7.y1 |
| Conread position: | 13-479 |
| Cow position: | chr13:22184182-22183671 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 358 |
| Conread position: | 14-479 |
| Cow position: | chr13:49495012-49494518 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 344 |
| Conread position: | 17-390 |
| Cow position: | chr13:3534712-3534319 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 18-234 |
| Cow position: | chr13:31690973-31690761 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 117, 73 |
| Conread position: | 18-276 |
| Cow position: | chr13:60699420-60699137 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 18-478 |
| Cow position: | chr13:32923963-32923473 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 18-479 |
| Cow position: | chr13:6666964-6666478 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 18-479 |
| Cow position: | chr13:14401937-14401447 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 18-480 |
| Cow position: | chr13:50661448-50661908 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 19-228 |
| Cow position: | chr13:28860335-28860557 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 19-231 |
| Cow position: | chr13:4484962-4485185 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 52, 173 |
| Conread position: | 19-231 |
| Cow position: | chr13:15543710-15543936 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-288 |
| Cow position: | chr13:34324409-34324113 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 19-316 |
| Cow position: | chr13:60468596-60468920 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-357 |
| Cow position: | chr13:42217512-42217148 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 19-365 |
| Cow position: | chr13:31732723-31732353 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 162 |
| Conread position: | 19-380 |
| Cow position: | chr13:17309634-17310020 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-391 |
| Cow position: | chr13:21697434-21697837 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-444 |
| Cow position: | chr13:48358804-48359251 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 385 |
| Conread position: | 19-461 |
| Cow position: | chr13:30276149-30275695 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 121 |
| Conread position: | 19-466 |
| Cow position: | chr13:37835149-37834673 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 19-473 |
| Cow position: | chr13:9045934-9046404 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 19-475 |
| Cow position: | chr13:34041164-34040675 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-476 |
| Cow position: | chr13:42090521-42090035 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-477 |
| Cow position: | chr13:13326099-13326582 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 19-479 |
| Cow position: | chr13:678921-679409 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 393 |
| Conread position: | 19-479 |
| Cow position: | chr13:4942555-4943046 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr13:5500828-5500338 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 19-479 |
| Cow position: | chr13:6358294-6358785 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 19-479 |
| Cow position: | chr13:13901038-13901525 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 175 |
| Conread position: | 19-479 |
| Cow position: | chr13:14177679-14177204 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 309 |
| Conread position: | 19-479 |
| Cow position: | chr13:15449970-15449513 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 19-479 |
| Cow position: | chr13:31508080-31508567 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 320 |
| Conread position: | 19-479 |
| Cow position: | chr13:31611138-31610656 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 256 |
| Conread position: | 19-479 |
| Cow position: | chr13:32736000-32735531 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 19-479 |
| Cow position: | chr13:32984174-32983683 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 297 |
| Conread position: | 19-479 |
| Cow position: | chr13:34030777-34031254 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 19-479 |
| Cow position: | chr13:35758456-35758939 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 19-479 |
| Cow position: | chr13:49974836-49975336 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 460 |
| Conread position: | 19-480 |
| Cow position: | chr13:33335136-33334661 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 19-480 |
| Cow position: | chr13:47575254-47575750 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 417 |
| Conread position: | 19-481 |
| Cow position: | chr13:14186170-14186662 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 122 |
| Conread position: | 19-481 |
| Cow position: | chr13:50110623-50111121 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-481 |
| Cow position: | chr13:60648635-60648144 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 19-482 |
| Cow position: | chr13:3482647-3482174 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 19-482 |
| Cow position: | chr13:60423923-60424404 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 110 |
| Conread position: | 20-280 |
| Cow position: | chr13:2387634-2387348 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 20-357 |
| Cow position: | chr13:44752139-44752493 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 20-440 |
| Cow position: | chr13:50193225-50192776 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 20-454 |
| Cow position: | chr13:46527620-46528076 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 311 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 262 |
| Conread position: | 20-479 |
| Cow position: | chr13:34938615-34939096 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 20-481 |
| Cow position: | chr13:34343077-34343569 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 20-482 |
| Cow position: | chr13:43590495-43590969 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 21-231 |
| Cow position: | chr13:25692844-25693070 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 21-280 |
| Cow position: | chr13:34764659-34764398 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 21-347 |
| Cow position: | chr13:11793909-11793554 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 21-476 |
| Cow position: | chr13:16253344-16252860 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 21-479 |
| Cow position: | chr13:33524784-33524296 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 468 |
| Conread position: | 22-479 |
| Cow position: | chr13:31729720-31729245 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 23-298 |
| Cow position: | chr13:20541082-20540779 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 23-480 |
| Cow position: | chr13:34049911-34050363 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 48 |
| Conread position: | 29-339 |
| Cow position: | chr13:62024773-62024452 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 29-368 |
| Cow position: | chr13:3653133-3652763 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 292 |
| Conread position: | 36-225 |
| Cow position: | chr13:34908848-34908649 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 36-477 |
| Cow position: | chr13:26845449-26845872 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 38-474 |
| Cow position: | chr13:43981894-43981431 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 39-478 |
| Cow position: | chr13:21839008-21838549 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 63-364 |
| Cow position: | chr13:11388215-11388538 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 65-473 |
| Cow position: | chr13:728456-728886 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 65-479 |
| Cow position: | chr13:11797489-11797045 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 65-479 |
| Cow position: | chr13:30304419-30304857 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 398 |
| Conread position: | 69-458 |
| Cow position: | chr13:19441667-19442062 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 91-419 |
| Cow position: | chr13:30654174-30653824 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 91-425 |
| Cow position: | chr13:9298698-9299054 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 110-461 |
| Cow position: | chr13:47568420-47568776 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 113-343 |
| Cow position: | chr13:44652573-44652334 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 113-477 |
| Cow position: | chr13:11763358-11762980 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 235 |
| Conread position: | 115-464 |
| Cow position: | chr13:34869248-34869618 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 127-470 |
| Cow position: | chr13:7725157-7724797 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 180 |
| Conread position: | 131-468 |
| Cow position: | chr13:5624451-5624099 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 184 |
| Conread position: | 147-457 |
| Cow position: | chr13:36348825-36348508 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 167 |
| Conread position: | 164-479 |
| Cow position: | chr13:32547834-32548148 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 193-479 |
| Cow position: | chr13:3760271-3759968 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.