Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-349
Cow position: chr14:11561876-11562240 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 43

Conread position: 1-479
Cow position: chr14:35425154-35425649 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 60

Conread position: 4-482
Cow position: chr14:44255729-44255243 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 343
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 20, 7

Conread position: 14-241
Cow position: chr14:33402723-33402962 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 53, 214

Conread position: 18-426
Cow position: chr14:18417552-18417986 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 20

Conread position: 18-479
Cow position: chr14:48601298-48600817 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 39

Conread position: 18-481
Cow position: chr14:2295314-2295805 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 208

Conread position: 19-165
Cow position: chr14:40342106-40342262 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 52, 93

Conread position: 19-181
Cow position: chr14:44690117-44690286 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 91

Conread position: 19-231
Cow position: chr14:10147920-10148146 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 178
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 48, 0

Conread position: 19-279
Cow position: chr14:9521670-9521389 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 19-299
Cow position: chr14:45207330-45207631 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 44, 56

Conread position: 19-306
Cow position: chr14:9046624-9046938 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 19-306
Cow position: chr14:12124137-12123824 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-363
Cow position: chr14:35930642-35931001 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 19-368
Cow position: chr14:15274793-15274421 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 19-368
Cow position: chr14:17687542-17687916 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-386
Cow position: chr14:38148044-38148432 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 269
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 68, 31

Conread position: 19-411
Cow position: chr14:9102577-9102993 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 283
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 46, 294

Conread position: 19-422
Cow position: chr14:43556019-43556452 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 300
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 48, 117

Conread position: 19-450
Cow position: chr14:22030400-22029945 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 52

Conread position: 19-454
Cow position: chr14:11153104-11152642 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-455
Cow position: chr14:27978401-27978869 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-458
Cow position: chr14:13089900-13090343 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 297
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 75

Conread position: 19-468
Cow position: chr14:5513976-5514449 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 327

Conread position: 19-473
Cow position: chr14:12741993-12741516 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 19-473
Cow position: chr14:43559281-43559767 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 331

Conread position: 19-474
Cow position: chr14:33605873-33605401 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 310
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 56

Conread position: 19-476
Cow position: chr14:24522982-24523460 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 323
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 46, 401

Conread position: 19-477
Cow position: chr14:45188762-45188276 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 42

Conread position: 19-478
Cow position: chr14:191091-191585 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 23

Conread position: 19-478
Cow position: chr14:751612-752101 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-478
Cow position: chr14:16272250-16271791 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 209

Conread position: 19-478
Cow position: chr14:19327217-19326727 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-478
Cow position: chr14:44552884-44553363 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 303

Conread position: 19-478
Cow position: chr14:45710683-45710202 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 126

Conread position: 19-479
Cow position: chr14:2287312-2287801 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 19-479
Cow position: chr14:5074998-5075472 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 117

Conread position: 19-479
Cow position: chr14:5530103-5530594 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr14:12611457-12611927 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 319

Conread position: 19-479
Cow position: chr14:13303998-13304492 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr14:13863051-13862566 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 307

Conread position: 19-479
Cow position: chr14:16808277-16807787 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 339

Conread position: 19-479
Cow position: chr14:20783513-20784003 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr14:29046628-29046144 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 358

Conread position: 19-479
Cow position: chr14:29775049-29774581 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 74

Conread position: 19-479
Cow position: chr14:45678036-45677555 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 67

Conread position: 19-480
Cow position: chr14:17000011-16999514 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-480
Cow position: chr14:23256318-23255824 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-481
Cow position: chr14:32448008-32448492 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 113

Conread position: 19-481
Cow position: chr14:45670990-45670493 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-482
Cow position: chr14:1659501-1659994 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 86

Conread position: 19-482
Cow position: chr14:16918672-16918195 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 412

Conread position: 19-482
Cow position: chr14:45027960-45027461 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 221

Conread position: 20-181
Cow position: chr14:50111848-50112025 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 20-231
Cow position: chr14:44227423-44227648 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 43, 55

Conread position: 20-241
Cow position: chr14:27990563-27990342 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 51, 17

Conread position: 20-299
Cow position: chr14:13274652-13274945 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 177
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 18

Conread position: 20-367
Cow position: chr14:37454883-37454527 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 18

Conread position: 20-471
Cow position: chr14:47939926-47939438 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 331
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 51, 92

Conread position: 20-474
Cow position: chr14:24996547-24996089 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 310
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 74

Conread position: 20-478
Cow position: chr14:48253268-48252792 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 20-479
Cow position: chr14:13579430-13579893 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 184

Conread position: 20-479
Cow position: chr14:13779998-13780485 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 392

Conread position: 20-479
Cow position: chr14:30595308-30594818 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 112

Conread position: 20-480
Cow position: chr14:17759841-17759368 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 18

Conread position: 20-481
Cow position: chr14:46466714-46467195 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 20-481
Cow position: chr14:47643339-47643824 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 324
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 70, 28

Conread position: 20-482
Cow position: chr14:44290112-44290598 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 405

Conread position: 21-480
Cow position: chr14:7473399-7473886 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 405

Conread position: 21-481
Cow position: chr14:11476240-11475757 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 426

Conread position: 21-481
Cow position: chr14:33678111-33678599 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 207

Conread position: 21-481
Cow position: chr14:45086288-45086755 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 46

Conread position: 23-405
Cow position: chr14:17610117-17610515 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 102

Conread position: 25-479
Cow position: chr14:44380403-44380882 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 29-356
Cow position: chr14:49217170-49217521 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 242
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 47, 28

Conread position: 29-480
Cow position: chr14:48826333-48826807 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 395

Conread position: 35-479
Cow position: chr14:37225219-37225692 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 39-479
Cow position: chr14:17490273-17489804 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 193

Conread position: 57-479
Cow position: chr14:16342814-16342365 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 64-478
Cow position: chr14:29223984-29223537 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 305
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 27, 42

Conread position: 85-473
Cow position: chr14:40167555-40167152 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 20

Conread position: 88-475
Cow position: chr14:44480230-44480614 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 273
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 145, 53

Conread position: 91-349
Cow position: chr14:20564512-20564246 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 52

Conread position: 92-482
Cow position: chr14:41410882-41411278 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 281
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 16, 59

Conread position: 97-454
Cow position: chr14:34861754-34862134 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 14, 151

Conread position: 99-482
Cow position: chr14:25693083-25693476 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 189

Conread position: 105-478
Cow position: chr14:30660929-30660534 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 47, 19

Conread position: 127-476
Cow position: chr14:33712241-33712611 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 254
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 177

Conread position: 128-481
Cow position: chr14:42122411-42122045 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 17

Conread position: 139-453
Cow position: chr14:20911097-20911422 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 82, 11

Conread position: 141-481
Cow position: chr14:45082295-45082653 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 293

Conread position: 144-368
Cow position: chr14:30583217-30582980 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 147-480
Cow position: chr14:46390443-46390094 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 139

Conread position: 152-479
Cow position: chr14:33392734-33392388 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 162-480
Cow position: chr14:47656588-47656918 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 71, 257

Conread position: 171-479
Cow position: chr14:44690391-44690711 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 183

Conread position: 179-474
Cow position: chr14:8413150-8413453 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 98

Conread position: 179-480
Cow position: chr14:13462676-13462976 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 94

Conread position: 186-479
Cow position: chr14:50112585-50112900 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 193-477
Cow position: chr14:50142209-50142509 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 142

Show alignments to all cow chromosomes.