Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-344
Cow position: chr16:19149912-19149550 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 358

Conread position: 1-479
Cow position: chr16:41753936-41753421 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 297

Conread position: 3-368
Cow position: chr16:41762509-41762892 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 268
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 14, 74

Conread position: 4-234
Cow position: chr16:29984705-29984949 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 15, 35

Conread position: 14-231
Cow position: chr16:10565084-10564856 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 147

Conread position: 18-473
Cow position: chr16:20202675-20203163 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 19

Conread position: 18-479
Cow position: chr16:16240582-16240102 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 44

Conread position: 18-479
Cow position: chr16:18497617-18497124 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 18-479
Cow position: chr16:23671406-23671888 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 55

Conread position: 18-479
Cow position: chr16:26664456-26664918 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 81

Conread position: 18-479
Cow position: chr16:34531000-34531479 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 139

Conread position: 19-147
Cow position: chr16:23251723-23251585 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 19-183
Cow position: chr16:31591213-31591040 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 68, 38

Conread position: 19-209
Cow position: chr16:406336-406132 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 0

Conread position: 19-220
Cow position: chr16:41165969-41165756 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 199

Conread position: 19-223
Cow position: chr16:4301499-4301282 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 19-278
Cow position: chr16:25001593-25001308 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 19-306
Cow position: chr16:18678056-18678352 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 214

Conread position: 19-356
Cow position: chr16:28196540-28196177 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-363
Cow position: chr16:55049191-55048839 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 241
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 56, 19

Conread position: 19-403
Cow position: chr16:26978828-26979219 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 280
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 13

Conread position: 19-434
Cow position: chr16:10374895-10374456 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 348

Conread position: 19-462
Cow position: chr16:838019-838487 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 125

Conread position: 19-465
Cow position: chr16:23535189-23534721 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 19

Conread position: 19-466
Cow position: chr16:5871587-5872071 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 367

Conread position: 19-468
Cow position: chr16:2410233-2409753 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 175

Conread position: 19-468
Cow position: chr16:25456776-25456301 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 19

Conread position: 19-473
Cow position: chr16:1432890-1433369 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 470

Conread position: 19-476
Cow position: chr16:10438960-10439443 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 19-476
Cow position: chr16:51084856-51085343 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 39

Conread position: 19-477
Cow position: chr16:1860935-1861430 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 299

Conread position: 19-477
Cow position: chr16:18667089-18667575 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 93

Conread position: 19-478
Cow position: chr16:1959914-1959436 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 92

Conread position: 19-478
Cow position: chr16:2726512-2726024 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 56

Conread position: 19-478
Cow position: chr16:5662540-5663031 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 482

Conread position: 19-478
Cow position: chr16:15185779-15186264 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 298

Conread position: 19-478
Cow position: chr16:43896559-43896077 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 461

Conread position: 19-479
Cow position: chr16:33232-33723 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 44

Conread position: 19-479
Cow position: chr16:1566752-1566272 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 306

Conread position: 19-479
Cow position: chr16:2482432-2481959 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 19-479
Cow position: chr16:3088499-3088012 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 19

Conread position: 19-479
Cow position: chr16:7675748-7675270 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 135

Conread position: 19-479
Cow position: chr16:8815400-8814919 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 19

Conread position: 19-479
Cow position: chr16:10967384-10966910 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 15

Conread position: 19-479
Cow position: chr16:16229021-16229493 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 56

Conread position: 19-479
Cow position: chr16:23984001-23984494 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr16:25442332-25442817 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 463

Conread position: 19-479
Cow position: chr16:27594208-27594699 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-479
Cow position: chr16:37480155-37479664 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 126

Conread position: 19-480
Cow position: chr16:5890702-5891189 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 285

Conread position: 19-480
Cow position: chr16:15567961-15568445 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 19

Conread position: 19-480
Cow position: chr16:19778948-19778459 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 110

Conread position: 19-480
Cow position: chr16:28470369-28469869 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 19-480
Cow position: chr16:29047726-29048215 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 48

Conread position: 19-480
Cow position: chr16:40295459-40294974 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 55

Conread position: 19-480
Cow position: chr16:41572098-41572592 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 64

Conread position: 19-480
Cow position: chr16:41685545-41685075 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 131

Conread position: 19-480
Cow position: chr16:47627946-47627472 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 109

Conread position: 19-480
Cow position: chr16:51403176-51402693 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 204

Conread position: 19-480
Cow position: chr16:52590974-52590496 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 63

Conread position: 19-481
Cow position: chr16:12537246-12536760 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 19-481
Cow position: chr16:27732681-27732187 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 20-288
Cow position: chr16:9931438-9931728 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 20

Conread position: 20-356
Cow position: chr16:40557243-40556870 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 266
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 64, 0

Conread position: 20-368
Cow position: chr16:5485431-5485799 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 20-428
Cow position: chr16:16898161-16898606 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 354

Conread position: 20-478
Cow position: chr16:49233778-49233300 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 136

Conread position: 20-479
Cow position: chr16:2238062-2237580 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 97

Conread position: 20-480
Cow position: chr16:3330641-3331121 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 51

Conread position: 20-480
Cow position: chr16:49221198-49220726 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 21-302
Cow position: chr16:39824628-39824931 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 21-325
Cow position: chr16:48333865-48333561 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 139, 50

Conread position: 21-473
Cow position: chr16:5527682-5527201 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 21-478
Cow position: chr16:25342674-25343161 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 348

Conread position: 21-478
Cow position: chr16:27005750-27006246 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 338
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 136, 11

Conread position: 21-478
Cow position: chr16:32937225-32937694 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 185

Conread position: 22-479
Cow position: chr16:54324632-54324137 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 23-448
Cow position: chr16:48680024-48679588 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 286
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 123, 25

Conread position: 23-479
Cow position: chr16:25086322-25086803 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 52

Conread position: 26-367
Cow position: chr16:4367806-4368155 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 91, 28

Conread position: 26-481
Cow position: chr16:337897-338370 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 300

Conread position: 27-453
Cow position: chr16:15047750-15047322 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 274
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 70, 45

Conread position: 34-254
Cow position: chr16:49255515-49255279 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 54, 0

Conread position: 35-481
Cow position: chr16:12668052-12667585 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 306
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 7, 29

Conread position: 38-275
Cow position: chr16:16520048-16519788 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 33, 140

Conread position: 38-355
Cow position: chr16:44669670-44669349 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 53, 27

Conread position: 38-371
Cow position: chr16:16270414-16270061 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 10

Conread position: 38-473
Cow position: chr16:14665093-14664634 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 443

Conread position: 60-480
Cow position: chr16:28158320-28158773 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 63-479
Cow position: chr16:25258551-25258994 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 9

Conread position: 65-407
Cow position: chr16:39366120-39365773 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 245
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 92

Conread position: 65-468
Cow position: chr16:23809114-23809540 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 56

Conread position: 69-479
Cow position: chr16:27823493-27823063 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 241

Conread position: 86-262
Cow position: chr16:29034719-29034908 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 152
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 63, 25

Conread position: 86-479
Cow position: chr16:5119244-5118827 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 86-479
Cow position: chr16:28169546-28169130 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 5

Conread position: 89-480
Cow position: chr16:53092265-53092657 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 51, 177

Conread position: 94-474
Cow position: chr16:44410839-44411235 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 259
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 51, 11

Conread position: 94-477
Cow position: chr16:42735790-42735409 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 123-468
Cow position: chr16:27712367-27712008 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 164

Conread position: 124-479
Cow position: chr16:23251150-23250792 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 18

Conread position: 142-479
Cow position: chr16:20193335-20192980 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 155-479
Cow position: chr16:4474756-4474410 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 158-480
Cow position: chr16:7465458-7465798 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 129

Conread position: 163-478
Cow position: chr16:3828481-3828142 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 165-480
Cow position: chr16:44899791-44899473 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 66

Show alignments to all cow chromosomes.