Cow genome map
| Conread name: | rsag15_c7.y1 |
| Conread position: | 14-476 |
| Cow position: | chr17:4783541-4783048 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 15-296 |
| Cow position: | chr17:150620-150333 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 95 |
| Conread position: | 18-363 |
| Cow position: | chr17:21418837-21419198 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 53 |
| Conread position: | 18-459 |
| Cow position: | chr17:15142081-15141611 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 18-473 |
| Cow position: | chr17:20099198-20098727 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 293 |
| Conread position: | 18-480 |
| Cow position: | chr17:2149701-2150143 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 19-213 |
| Cow position: | chr17:33284570-33284375 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 19-230 |
| Cow position: | chr17:239586-239803 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 19-231 |
| Cow position: | chr17:2580897-2581123 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-231 |
| Cow position: | chr17:18195063-18195285 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 19-283 |
| Cow position: | chr17:1704145-1704436 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 19-357 |
| Cow position: | chr17:14240780-14241142 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 297 |
| Conread position: | 19-368 |
| Cow position: | chr17:9080145-9079771 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 310 |
| Conread position: | 19-398 |
| Cow position: | chr17:1786686-1786285 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 189 |
| Conread position: | 19-449 |
| Cow position: | chr17:6261136-6261595 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 256 |
| Conread position: | 19-464 |
| Cow position: | chr17:3640629-3640154 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-466 |
| Cow position: | chr17:11086448-11085974 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-468 |
| Cow position: | chr17:14215751-14215293 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 187 |
| Conread position: | 19-474 |
| Cow position: | chr17:34157397-34157881 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 19-478 |
| Cow position: | chr17:733069-732579 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 19-478 |
| Cow position: | chr17:4083293-4083770 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 274 |
| Conread position: | 19-478 |
| Cow position: | chr17:8203214-8203699 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 92 |
| Conread position: | 19-478 |
| Cow position: | chr17:20403694-20404178 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 271 |
| Conread position: | 19-478 |
| Cow position: | chr17:24783437-24783927 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-478 |
| Cow position: | chr17:43989779-43990263 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 19-479 |
| Cow position: | chr17:182851-183337 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 19-479 |
| Cow position: | chr17:4061380-4061876 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 19-479 |
| Cow position: | chr17:6069825-6070295 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 352 |
| Conread position: | 19-479 |
| Cow position: | chr17:11784133-11784633 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-479 |
| Cow position: | chr17:15437059-15437550 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr17:16121306-16120845 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 111 |
| Conread position: | 19-479 |
| Cow position: | chr17:20080605-20080133 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 19-479 |
| Cow position: | chr17:24028724-24028239 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 19-479 |
| Cow position: | chr17:29302032-29302523 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr17:39049490-39049983 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-479 |
| Cow position: | chr17:40806084-40806572 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 466 |
| Conread position: | 19-480 |
| Cow position: | chr17:2246806-2246323 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 460 |
| Conread position: | 19-480 |
| Cow position: | chr17:6000217-5999732 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 124 |
| Conread position: | 19-480 |
| Cow position: | chr17:14936695-14936207 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 296 |
| Conread position: | 19-480 |
| Cow position: | chr17:19267552-19267078 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 19-480 |
| Cow position: | chr17:20086490-20086008 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 19-481 |
| Cow position: | chr17:13967202-13967694 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 210 |
| Conread position: | 19-482 |
| Cow position: | chr17:2077719-2077230 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 443 |
| Conread position: | 19-482 |
| Cow position: | chr17:2263416-2263908 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 19-482 |
| Cow position: | chr17:23038843-23039315 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 20-231 |
| Cow position: | chr17:2175073-2175280 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 20-231 |
| Cow position: | chr17:4675382-4675604 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 37 |
| Conread position: | 20-350 |
| Cow position: | chr17:251413-251776 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 20-352 |
| Cow position: | chr17:3655013-3654655 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 20-473 |
| Cow position: | chr17:15372500-15372965 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 20-477 |
| Cow position: | chr17:1881569-1882030 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 20-479 |
| Cow position: | chr17:15326555-15327043 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 20-479 |
| Cow position: | chr17:15851969-15852459 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 21-472 |
| Cow position: | chr17:5227900-5228381 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 21-479 |
| Cow position: | chr17:23323171-23322682 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 22-208 |
| Cow position: | chr17:20230555-20230748 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 23-213 |
| Cow position: | chr17:31534143-31534333 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 125, 56 |
| Conread position: | 27-477 |
| Cow position: | chr17:3235283-3235707 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 119, 44 |
| Conread position: | 28-479 |
| Cow position: | chr17:2169720-2170187 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 29-468 |
| Cow position: | chr17:3707499-3707046 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 36-197 |
| Cow position: | chr17:22559257-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 36-301 |
| Cow position: | chr17:1656568-1656300 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 197, 45 |
| Conread position: | 38-478 |
| Cow position: | chr17:27793487-27793018 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 38-480 |
| Cow position: | chr17:28027212-28026741 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 280 |
| Conread position: | 59-348 |
| Cow position: | chr17:42266983-42267286 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 64-479 |
| Cow position: | chr17:9751034-9751469 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 84-479 |
| Cow position: | chr17:15685765-15686171 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 15 |
| Conread position: | 86-300 |
| Cow position: | chr17:22133614-22133848 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 86-477 |
| Cow position: | chr17:14039686-14039290 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 88-479 |
| Cow position: | chr17:135981-136392 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 394 |
| Conread position: | 88-479 |
| Cow position: | chr17:6121144-6121552 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 113-482 |
| Cow position: | chr17:14306939-14306563 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 33, 162 |
| Conread position: | 115-479 |
| Cow position: | chr17:39821-40206 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 122-479 |
| Cow position: | chr17:17257302-17256924 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 141-476 |
| Cow position: | chr17:20415050-20414697 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 142-481 |
| Cow position: | chr17:2554864-2554508 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 344 |
| Conread position: | 159-479 |
| Cow position: | chr17:19980707-19980373 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 159-481 |
| Cow position: | chr17:4346150-4345822 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 223 |
| Conread position: | 186-480 |
| Cow position: | chr17:34159183-34159494 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 194-478 |
| Cow position: | chr17:22561361-22561652 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 199-479 |
| Cow position: | chr17:45271650-45271353 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.