Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-472
Cow position: chr18:16392632-16392137 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 336
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 19, 88

Conread position: 1-475
Cow position: chr18:4947421-4947917 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 40

Conread position: 14-475
Cow position: chr18:51274601-51274111 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 18-479
Cow position: chr18:14131878-14132364 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 189

Conread position: 19-172
Cow position: chr18:52652396-52652562 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 19-231
Cow position: chr18:37157742-37157516 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 29

Conread position: 19-231
Cow position: chr18:56014069-56014284 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 140

Conread position: 19-232
Cow position: chr18:54022646-54022422 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 193

Conread position: 19-308
Cow position: chr18:41839321-41839027 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 38

Conread position: 19-350
Cow position: chr18:35054613-35054964 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-356
Cow position: chr18:28972401-28972040 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 19-363
Cow position: chr18:16089603-16089973 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-366
Cow position: chr18:51461567-51461194 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 19-368
Cow position: chr18:51695185-51695558 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 361

Conread position: 19-457
Cow position: chr18:51343171-51343635 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 19-475
Cow position: chr18:54170023-54169544 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 199

Conread position: 19-478
Cow position: chr18:19485626-19486119 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 114

Conread position: 19-479
Cow position: chr18:14417452-14417943 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr18:16175135-16174647 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 413

Conread position: 19-479
Cow position: chr18:19353850-19354341 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr18:23799133-23799618 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 186

Conread position: 19-479
Cow position: chr18:27988670-27989160 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr18:29865126-29864637 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 40

Conread position: 19-479
Cow position: chr18:33270402-33270870 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 85

Conread position: 19-479
Cow position: chr18:37490314-37490795 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 271

Conread position: 19-479
Cow position: chr18:47742989-47743465 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 215

Conread position: 19-479
Cow position: chr18:51593483-51593963 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 319
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 112

Conread position: 19-479
Cow position: chr18:54004689-54004204 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 175

Conread position: 19-480
Cow position: chr18:5534494-5534981 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 176

Conread position: 19-481
Cow position: chr18:25352747-25353237 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 20-231
Cow position: chr18:36110627-36110405 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 14

Conread position: 20-288
Cow position: chr18:26245138-26244844 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 51, 0

Conread position: 20-351
Cow position: chr18:56485169-56484810 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 190

Conread position: 20-387
Cow position: chr18:2646037-2645679 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 129, 45

Conread position: 20-477
Cow position: chr18:37663810-37664260 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 309
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 18

Conread position: 20-478
Cow position: chr18:36510101-36510591 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 213

Conread position: 20-478
Cow position: chr18:37507445-37507936 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 20-478
Cow position: chr18:51482343-51482827 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 51

Conread position: 20-479
Cow position: chr18:29238380-29238859 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 143

Conread position: 21-231
Cow position: chr18:38342807-38342595 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 49, 87

Conread position: 21-367
Cow position: chr18:40315945-40315595 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 44

Conread position: 22-475
Cow position: chr18:15856704-15857159 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 317
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 123, 43

Conread position: 23-480
Cow position: chr18:25364654-25365143 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 269

Conread position: 27-453
Cow position: chr18:35373271-35372817 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 317
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 38, 14

Conread position: 27-479
Cow position: chr18:24617629-24618107 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 29-299
Cow position: chr18:33752193-33752485 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 29-482
Cow position: chr18:32769224-32769701 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 318

Conread position: 48-479
Cow position: chr18:25921908-25922360 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 430

Conread position: 63-368
Cow position: chr18:27538393-27538721 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 115-479
Cow position: chr18:40482586-40482970 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 191

Conread position: 136-479
Cow position: chr18:11273247-11272884 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 162

Conread position: 136-479
Cow position: chr18:32166313-32165955 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 194

Conread position: 142-448
Cow position: chr18:48469561-48469235 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 174

Conread position: 148-474
Cow position: chr18:19336208-19336551 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 155-478
Cow position: chr18:52654448-52654785 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 148

Conread position: 160-482
Cow position: chr18:40344729-40344419 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 72

Conread position: 167-479
Cow position: chr18:16147343-16147039 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 70

Conread position: 177-481
Cow position: chr18:23660846-23660525 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.