Cow genome map
Conread name: | rsag15_c7.y1 |
Conread position: | 1-328 |
Cow position: | chr21:218550-218903 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 242 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 19, 53 |
Conread position: | 3-482 |
Cow position: | chr21:30597925-30597416 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 274 |
Conread position: | 14-232 |
Cow position: | chr21:21520168-21520391 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 160 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 5, 19 |
Conread position: | 17-468 |
Cow position: | chr21:18816692-18816218 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 285 |
Conread position: | 18-278 |
Cow position: | chr21:28985660-28985936 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 193 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 53, 24 |
Conread position: | 18-357 |
Cow position: | chr21:405596-405238 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 236 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 47, 101 |
Conread position: | 18-476 |
Cow position: | chr21:25815993-25815523 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 63 |
Conread position: | 18-477 |
Cow position: | chr21:2539525-2539030 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 305 |
Conread position: | 18-479 |
Cow position: | chr21:37372795-37373278 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 83 |
Conread position: | 19-187 |
Cow position: | chr21:35145313-35145487 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 134 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 52, 29 |
Conread position: | 19-199 |
Cow position: | chr21:12054456-12054262 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 153 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 19-225 |
Cow position: | chr21:34822649-34822429 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 176 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 19-234 |
Cow position: | chr21:36979887-36980101 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 155 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 129, 62 |
Conread position: | 19-288 |
Cow position: | chr21:5839625-5839348 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 209 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 44, 56 |
Conread position: | 19-301 |
Cow position: | chr21:21943020-21942720 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 204 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 48, 154 |
Conread position: | 19-350 |
Cow position: | chr21:2712479-2712814 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 57 |
Conread position: | 19-350 |
Cow position: | chr21:10851638-10851995 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 19-350 |
Cow position: | chr21:38801998-38802355 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 19-356 |
Cow position: | chr21:33253744-33254105 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 56 |
Conread position: | 19-443 |
Cow position: | chr21:24085242-24084787 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 134 |
Conread position: | 19-457 |
Cow position: | chr21:29003976-29003489 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 19-462 |
Cow position: | chr21:6414463-6413989 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 19-467 |
Cow position: | chr21:361225-361704 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 95 |
Conread position: | 19-473 |
Cow position: | chr21:30604-31073 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 38 |
Conread position: | 19-476 |
Cow position: | chr21:47942510-47942996 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 19-477 |
Cow position: | chr21:1286652-1286152 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 408 |
Conread position: | 19-478 |
Cow position: | chr21:28257001-28257470 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 24 |
Conread position: | 19-478 |
Cow position: | chr21:31250573-31251044 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 118 |
Conread position: | 19-478 |
Cow position: | chr21:34655397-34655876 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 108 |
Conread position: | 19-478 |
Cow position: | chr21:36979349-36978852 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 327 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 48, 288 |
Conread position: | 19-479 |
Cow position: | chr21:147485-147972 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 307 |
Conread position: | 19-479 |
Cow position: | chr21:5018701-5019194 (view UCSC Genome Browser custom track) |
Alignm length: | 494 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 19-479 |
Cow position: | chr21:27069399-27068912 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 19-479 |
Cow position: | chr21:27285030-27285499 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 47 |
Conread position: | 19-479 |
Cow position: | chr21:30563235-30563715 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 440 |
Conread position: | 19-479 |
Cow position: | chr21:31514753-31514265 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 318 |
Conread position: | 19-479 |
Cow position: | chr21:40270111-40269619 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 19-479 |
Cow position: | chr21:47646896-47647384 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 19-480 |
Cow position: | chr21:468460-468950 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 47 |
Conread position: | 19-480 |
Cow position: | chr21:997275-996789 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 71 |
Conread position: | 19-480 |
Cow position: | chr21:13298159-13298630 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 21 |
Conread position: | 19-480 |
Cow position: | chr21:26635596-26635105 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 464 |
Conread position: | 19-480 |
Cow position: | chr21:28613889-28614365 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 236 |
Conread position: | 19-481 |
Cow position: | chr21:2880260-2879775 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 331 |
Conread position: | 19-482 |
Cow position: | chr21:2512410-2512900 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 464 |
Conread position: | 19-482 |
Cow position: | chr21:11507175-11507657 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 346 |
Conread position: | 19-482 |
Cow position: | chr21:21916810-21917276 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 46 |
Conread position: | 20-299 |
Cow position: | chr21:27567308-27567610 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 230 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 66, 52 |
Conread position: | 20-461 |
Cow position: | chr21:15941239-15941665 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 284 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 71, 44 |
Conread position: | 20-477 |
Cow position: | chr21:26849456-26848979 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 70 |
Conread position: | 20-478 |
Cow position: | chr21:3780336-3780826 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 20-478 |
Cow position: | chr21:25125173-25125651 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 326 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 51, 191 |
Conread position: | 20-478 |
Cow position: | chr21:26836747-26837240 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 22 |
Conread position: | 20-480 |
Cow position: | chr21:37149577-37150026 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 12 |
Conread position: | 20-482 |
Cow position: | chr21:29257522-29257054 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 45 |
Conread position: | 21-473 |
Cow position: | chr21:10568266-10568743 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 91 |
Conread position: | 21-479 |
Cow position: | chr21:4182120-4182609 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 322 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 31, 21 |
Conread position: | 21-479 |
Cow position: | chr21:19612323-19612811 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 448 |
Conread position: | 22-477 |
Cow position: | chr21:21025031-21025510 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 50 |
Conread position: | 22-479 |
Cow position: | chr21:33710713-33711185 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 371 |
Conread position: | 23-275 |
Cow position: | chr21:49296438-49296700 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 179 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 44, 113 |
Conread position: | 23-454 |
Cow position: | chr21:4588438-4587987 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 131 |
Conread position: | 23-478 |
Cow position: | chr21:2417778-2418254 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 173 |
Conread position: | 31-199 |
Cow position: | chr21:45783045-45783225 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 136 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 31-467 |
Cow position: | chr21:9893548-9894007 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 11 |
Conread position: | 63-476 |
Cow position: | chr21:5012103-5011687 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 164 |
Conread position: | 64-453 |
Cow position: | chr21:21701524-21701938 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 279 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 49, 268 |
Conread position: | 68-397 |
Cow position: | chr21:26649086-26648752 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 31 |
Conread position: | 86-479 |
Cow position: | chr21:44764314-44763902 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 87-247 |
Cow position: | chr21:28736827-28736994 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 131 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 23, 66 |
Conread position: | 87-468 |
Cow position: | chr21:1688533-1688132 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 275 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 34, 223 |
Conread position: | 88-464 |
Cow position: | chr21:4712353-4712719 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 262 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 26, 64 |
Conread position: | 91-454 |
Cow position: | chr21:23297118-23296747 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 251 |
Alignm E-value: | 9e-24 |
Alignm gaps (pig, cow): | 24, 212 |
Conread position: | 97-449 |
Cow position: | chr21:31639561-31639934 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 250 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 13, 336 |
Conread position: | 108-479 |
Cow position: | chr21:7591318-7591707 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 187 |
Conread position: | 122-388 |
Cow position: | chr21:27150154-27150445 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 184 |
Conread position: | 142-473 |
Cow position: | chr21:29633471-29633808 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 227 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 16, 326 |
Conread position: | 158-427 |
Cow position: | chr21:23804136-23803853 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 196 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 75, 208 |
Conread position: | 161-479 |
Cow position: | chr21:42915524-42915856 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 0 |
Conread position: | 164-459 |
Cow position: | chr21:1194167-1194468 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 43 |
Conread position: | 167-481 |
Cow position: | chr21:35143968-35143641 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 230 |
Conread position: | 193-479 |
Cow position: | chr21:26402008-26401701 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 91 |
Show alignments to all cow chromosomes.