Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-328
Cow position: chr21:218550-218903 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 19, 53

Conread position: 3-482
Cow position: chr21:30597925-30597416 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 274

Conread position: 14-232
Cow position: chr21:21520168-21520391 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 19

Conread position: 17-468
Cow position: chr21:18816692-18816218 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 285

Conread position: 18-278
Cow position: chr21:28985660-28985936 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 53, 24

Conread position: 18-357
Cow position: chr21:405596-405238 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 101

Conread position: 18-476
Cow position: chr21:25815993-25815523 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 63

Conread position: 18-477
Cow position: chr21:2539525-2539030 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 305

Conread position: 18-479
Cow position: chr21:37372795-37373278 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 83

Conread position: 19-187
Cow position: chr21:35145313-35145487 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 29

Conread position: 19-199
Cow position: chr21:12054456-12054262 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 19-225
Cow position: chr21:34822649-34822429 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 176
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 48, 0

Conread position: 19-234
Cow position: chr21:36979887-36980101 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 62

Conread position: 19-288
Cow position: chr21:5839625-5839348 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 56

Conread position: 19-301
Cow position: chr21:21943020-21942720 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 154

Conread position: 19-350
Cow position: chr21:2712479-2712814 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 57

Conread position: 19-350
Cow position: chr21:10851638-10851995 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 19-350
Cow position: chr21:38801998-38802355 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-356
Cow position: chr21:33253744-33254105 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 56

Conread position: 19-443
Cow position: chr21:24085242-24084787 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 134

Conread position: 19-457
Cow position: chr21:29003976-29003489 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-462
Cow position: chr21:6414463-6413989 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-467
Cow position: chr21:361225-361704 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 19-473
Cow position: chr21:30604-31073 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 19-476
Cow position: chr21:47942510-47942996 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 19-477
Cow position: chr21:1286652-1286152 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 408

Conread position: 19-478
Cow position: chr21:28257001-28257470 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 24

Conread position: 19-478
Cow position: chr21:31250573-31251044 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 118

Conread position: 19-478
Cow position: chr21:34655397-34655876 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 108

Conread position: 19-478
Cow position: chr21:36979349-36978852 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 327
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 288

Conread position: 19-479
Cow position: chr21:147485-147972 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 307

Conread position: 19-479
Cow position: chr21:5018701-5019194 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 19-479
Cow position: chr21:27069399-27068912 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-479
Cow position: chr21:27285030-27285499 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 47

Conread position: 19-479
Cow position: chr21:30563235-30563715 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 440

Conread position: 19-479
Cow position: chr21:31514753-31514265 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 318

Conread position: 19-479
Cow position: chr21:40270111-40269619 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr21:47646896-47647384 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 19-480
Cow position: chr21:468460-468950 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 47

Conread position: 19-480
Cow position: chr21:997275-996789 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 71

Conread position: 19-480
Cow position: chr21:13298159-13298630 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 21

Conread position: 19-480
Cow position: chr21:26635596-26635105 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 464

Conread position: 19-480
Cow position: chr21:28613889-28614365 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 236

Conread position: 19-481
Cow position: chr21:2880260-2879775 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 331

Conread position: 19-482
Cow position: chr21:2512410-2512900 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 464

Conread position: 19-482
Cow position: chr21:11507175-11507657 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 346

Conread position: 19-482
Cow position: chr21:21916810-21917276 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 46

Conread position: 20-299
Cow position: chr21:27567308-27567610 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 66, 52

Conread position: 20-461
Cow position: chr21:15941239-15941665 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 284
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 44

Conread position: 20-477
Cow position: chr21:26849456-26848979 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 70

Conread position: 20-478
Cow position: chr21:3780336-3780826 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 20-478
Cow position: chr21:25125173-25125651 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 326
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 191

Conread position: 20-478
Cow position: chr21:26836747-26837240 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 22

Conread position: 20-480
Cow position: chr21:37149577-37150026 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 12

Conread position: 20-482
Cow position: chr21:29257522-29257054 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 21-473
Cow position: chr21:10568266-10568743 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 91

Conread position: 21-479
Cow position: chr21:4182120-4182609 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 322
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 31, 21

Conread position: 21-479
Cow position: chr21:19612323-19612811 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 448

Conread position: 22-477
Cow position: chr21:21025031-21025510 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 50

Conread position: 22-479
Cow position: chr21:33710713-33711185 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 371

Conread position: 23-275
Cow position: chr21:49296438-49296700 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 113

Conread position: 23-454
Cow position: chr21:4588438-4587987 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 131

Conread position: 23-478
Cow position: chr21:2417778-2418254 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 173

Conread position: 31-199
Cow position: chr21:45783045-45783225 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 31-467
Cow position: chr21:9893548-9894007 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 63-476
Cow position: chr21:5012103-5011687 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 164

Conread position: 64-453
Cow position: chr21:21701524-21701938 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 279
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 268

Conread position: 68-397
Cow position: chr21:26649086-26648752 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 31

Conread position: 86-479
Cow position: chr21:44764314-44763902 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 87-247
Cow position: chr21:28736827-28736994 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 66

Conread position: 87-468
Cow position: chr21:1688533-1688132 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 275
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 34, 223

Conread position: 88-464
Cow position: chr21:4712353-4712719 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 262
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 26, 64

Conread position: 91-454
Cow position: chr21:23297118-23296747 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 251
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 24, 212

Conread position: 97-449
Cow position: chr21:31639561-31639934 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 336

Conread position: 108-479
Cow position: chr21:7591318-7591707 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 187

Conread position: 122-388
Cow position: chr21:27150154-27150445 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 184

Conread position: 142-473
Cow position: chr21:29633471-29633808 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 227
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 16, 326

Conread position: 158-427
Cow position: chr21:23804136-23803853 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 75, 208

Conread position: 161-479
Cow position: chr21:42915524-42915856 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 164-459
Cow position: chr21:1194167-1194468 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 167-481
Cow position: chr21:35143968-35143641 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 230

Conread position: 193-479
Cow position: chr21:26402008-26401701 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 91

Show alignments to all cow chromosomes.