Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-481
Cow position: chr22:1323532-1324028 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 37

Conread position: 18-306
Cow position: chr22:3305209-3304901 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 123

Conread position: 18-400
Cow position: chr22:522004-521590 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 121

Conread position: 18-454
Cow position: chr22:325796-325318 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 18-462
Cow position: chr22:41474304-41473847 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 13

Conread position: 18-479
Cow position: chr22:695005-695499 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 111

Conread position: 18-479
Cow position: chr22:15352262-15352744 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 264

Conread position: 18-479
Cow position: chr22:21590811-21591303 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 18-479
Cow position: chr22:33352061-33352529 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 18-482
Cow position: chr22:14824302-14823818 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 17

Conread position: 19-185
Cow position: chr22:44366716-44366537 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 41

Conread position: 19-213
Cow position: chr22:18814975-18814767 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 19-230
Cow position: chr22:36185147-36185368 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 48, 60

Conread position: 19-231
Cow position: chr22:24951947-24952173 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 45, 56

Conread position: 19-232
Cow position: chr22:45582305-45582526 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 95, 46

Conread position: 19-243
Cow position: chr22:35906000-35905757 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 46, 0

Conread position: 19-270
Cow position: chr22:12730306-12730027 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 213
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 19-339
Cow position: chr22:6333103-6333446 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 180

Conread position: 19-367
Cow position: chr22:21195107-21194733 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 38

Conread position: 19-368
Cow position: chr22:16202303-16202677 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 273

Conread position: 19-386
Cow position: chr22:21035000-21034609 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 19-403
Cow position: chr22:10908446-10908037 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 289

Conread position: 19-419
Cow position: chr22:23800827-23800423 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 212

Conread position: 19-453
Cow position: chr22:15852813-15853274 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 309

Conread position: 19-476
Cow position: chr22:3803571-3804058 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 19-478
Cow position: chr22:13766756-13767242 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 45

Conread position: 19-478
Cow position: chr22:17327068-17326604 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 377

Conread position: 19-478
Cow position: chr22:20239449-20238959 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 119

Conread position: 19-478
Cow position: chr22:46614693-46615182 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 206

Conread position: 19-479
Cow position: chr22:296836-297327 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 356

Conread position: 19-479
Cow position: chr22:538500-538986 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 405

Conread position: 19-479
Cow position: chr22:559315-558827 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 53

Conread position: 19-479
Cow position: chr22:1281344-1280854 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 19-479
Cow position: chr22:11803661-11803174 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 175

Conread position: 19-479
Cow position: chr22:13547382-13546904 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 308
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 49, 227

Conread position: 19-479
Cow position: chr22:13773910-13774393 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 132

Conread position: 19-479
Cow position: chr22:29011882-29011396 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 14

Conread position: 19-479
Cow position: chr22:30677324-30676833 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:35670275-35669790 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:36860158-36859668 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:37292284-37291796 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:39468124-39467634 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:42992566-42993051 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 19-479
Cow position: chr22:44368092-44367601 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:44492445-44492929 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 140

Conread position: 19-479
Cow position: chr22:44935358-44935842 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 390

Conread position: 19-479
Cow position: chr22:45014741-45015226 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr22:46585174-46584687 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 424

Conread position: 19-480
Cow position: chr22:1880194-1880686 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-480
Cow position: chr22:15310550-15310076 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 198

Conread position: 19-480
Cow position: chr22:36276968-36277452 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 246

Conread position: 19-480
Cow position: chr22:46580328-46579834 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 19-482
Cow position: chr22:27308388-27307898 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-482
Cow position: chr22:30128976-30129460 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 19-482
Cow position: chr22:30146625-30147109 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 20-147
Cow position: chr22:40370869-40370998 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 17

Conread position: 20-305
Cow position: chr22:45510152-45509861 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 68

Conread position: 20-367
Cow position: chr22:37268558-37268929 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 234
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 51, 258

Conread position: 20-473
Cow position: chr22:44478136-44478593 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 52

Conread position: 20-476
Cow position: chr22:44518246-44517766 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 92

Conread position: 20-478
Cow position: chr22:1268362-1267884 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 115

Conread position: 20-479
Cow position: chr22:11807350-11806869 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 373

Conread position: 20-479
Cow position: chr22:18028679-18029150 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 158

Conread position: 20-481
Cow position: chr22:44397822-44398312 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 21-479
Cow position: chr22:30653910-30654410 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 198

Conread position: 21-479
Cow position: chr22:34169731-34170215 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 300

Conread position: 21-481
Cow position: chr22:3276965-3276474 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 23-474
Cow position: chr22:44348464-44348001 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 49

Conread position: 23-479
Cow position: chr22:290306-289817 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 112

Conread position: 24-350
Cow position: chr22:38960501-38960854 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 0

Conread position: 25-475
Cow position: chr22:15054056-15054533 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 320
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 42, 86

Conread position: 25-480
Cow position: chr22:5313685-5314169 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 26

Conread position: 26-481
Cow position: chr22:8736945-8736482 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 27-306
Cow position: chr22:19585584-19585294 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 124

Conread position: 30-479
Cow position: chr22:1519622-1519152 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 175

Conread position: 32-481
Cow position: chr22:23752303-23751829 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 174

Conread position: 36-479
Cow position: chr22:31333641-31333170 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 38-479
Cow position: chr22:19142275-19141809 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 283

Conread position: 53-479
Cow position: chr22:6022076-6022531 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 252

Conread position: 63-479
Cow position: chr22:32283245-32282801 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 65-478
Cow position: chr22:34601031-34601461 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 257

Conread position: 86-354
Cow position: chr22:15867604-15867894 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 203

Conread position: 86-421
Cow position: chr22:23509039-23508697 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 0

Conread position: 86-479
Cow position: chr22:29037136-29037537 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 338

Conread position: 88-405
Cow position: chr22:8120309-8119957 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 22

Conread position: 88-478
Cow position: chr22:37141985-37142382 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 195

Conread position: 88-479
Cow position: chr22:2563286-2562885 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 359

Conread position: 106-473
Cow position: chr22:15955532-15955157 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 40

Conread position: 115-479
Cow position: chr22:29499036-29499421 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 131-480
Cow position: chr22:18605284-18604919 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 5

Conread position: 132-321
Cow position: chr22:11033851-11034060 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 136-474
Cow position: chr22:8880615-8880971 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 285

Conread position: 138-478
Cow position: chr22:48274816-48274465 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 159

Conread position: 142-479
Cow position: chr22:28783640-28783994 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 158-313
Cow position: chr22:29352916-29353083 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 158-479
Cow position: chr22:9046119-9046459 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 43, 25

Conread position: 159-335
Cow position: chr22:37135307-37135493 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 72, 132

Conread position: 161-478
Cow position: chr22:6501368-6501037 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 130

Conread position: 164-479
Cow position: chr22:21336503-21336833 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 264

Conread position: 169-479
Cow position: chr22:13662031-13662349 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 206
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 97

Show alignments to all cow chromosomes.