Cow genome map

Conread name: rsag15_c7.y1

Conread position: 1-479
Cow position: chr24:8150856-8150355 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 337
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 25, 38

Conread position: 1-480
Cow position: chr24:4414084-4413593 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 14

Conread position: 13-474
Cow position: chr24:40101435-40100958 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 18

Conread position: 18-241
Cow position: chr24:6142551-6142778 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 67, 20

Conread position: 18-326
Cow position: chr24:6036464-6036797 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 18-482
Cow position: chr24:6130286-6130770 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 19-201
Cow position: chr24:14389062-14388873 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 100

Conread position: 19-217
Cow position: chr24:11151761-11151549 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 19-217
Cow position: chr24:16083305-16083093 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 52, 0

Conread position: 19-231
Cow position: chr24:6435959-6436185 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 19-241
Cow position: chr24:6407511-6407745 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 38

Conread position: 19-254
Cow position: chr24:12699348-12699099 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 155
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 48, 0

Conread position: 19-288
Cow position: chr24:8606292-8606591 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 52, 0

Conread position: 19-299
Cow position: chr24:310343-310649 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-319
Cow position: chr24:44018984-44019310 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-321
Cow position: chr24:12569503-12569821 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 60, 15

Conread position: 19-350
Cow position: chr24:6323879-6323518 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-368
Cow position: chr24:6023612-6023238 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 279

Conread position: 19-368
Cow position: chr24:9545531-9545906 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 19-407
Cow position: chr24:38639002-38639422 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 19-473
Cow position: chr24:7089514-7089045 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 37

Conread position: 19-473
Cow position: chr24:13179543-13179064 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 12

Conread position: 19-476
Cow position: chr24:6353609-6354098 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 169

Conread position: 19-477
Cow position: chr24:7063018-7063504 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 153

Conread position: 19-478
Cow position: chr24:9090578-9090095 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 122

Conread position: 19-478
Cow position: chr24:16560838-16560344 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 149

Conread position: 19-478
Cow position: chr24:38585642-38585170 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 68

Conread position: 19-479
Cow position: chr24:147136-146643 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr24:12149819-12149323 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 56

Conread position: 19-479
Cow position: chr24:13044152-13043662 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 423

Conread position: 19-479
Cow position: chr24:14755474-14755965 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr24:17322168-17322642 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 230

Conread position: 19-479
Cow position: chr24:23504384-23503893 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 19-479
Cow position: chr24:29188770-29189253 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 19

Conread position: 19-479
Cow position: chr24:33934864-33935354 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 19

Conread position: 19-480
Cow position: chr24:19834880-19835367 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 340

Conread position: 19-481
Cow position: chr24:12087675-12088167 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 480

Conread position: 19-481
Cow position: chr24:41003962-41004456 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 480

Conread position: 20-147
Cow position: chr24:25437760-25437892 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 20-169
Cow position: chr24:14277740-14277593 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 20-284
Cow position: chr24:36723300-36723594 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 20-300
Cow position: chr24:5991749-5991443 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 51, 0

Conread position: 20-368
Cow position: chr24:12204863-12204494 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 24

Conread position: 20-403
Cow position: chr24:12238761-12239178 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 312

Conread position: 20-473
Cow position: chr24:22321207-22321694 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 309
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 47, 28

Conread position: 20-479
Cow position: chr24:6963274-6962784 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 20-479
Cow position: chr24:13233735-13234214 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 138

Conread position: 20-479
Cow position: chr24:22972539-22973031 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 56

Conread position: 21-478
Cow position: chr24:36558073-36557604 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 131

Conread position: 22-388
Cow position: chr24:29352369-29351985 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 53

Conread position: 23-421
Cow position: chr24:35869090-35868681 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 98

Conread position: 23-453
Cow position: chr24:42584280-42583822 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 309
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 135

Conread position: 24-462
Cow position: chr24:19702974-19703436 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 118

Conread position: 26-476
Cow position: chr24:36298900-36299372 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 81

Conread position: 27-447
Cow position: chr24:12108068-12107632 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 433

Conread position: 27-479
Cow position: chr24:38289279-38288829 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 39

Conread position: 28-468
Cow position: chr24:12127623-12127155 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 29-479
Cow position: chr24:12334245-12333772 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 272

Conread position: 35-480
Cow position: chr24:14383136-14382663 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 269

Conread position: 38-476
Cow position: chr24:6668249-6667800 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 310
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 44, 21

Conread position: 38-479
Cow position: chr24:6337879-6338349 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 54-478
Cow position: chr24:17958034-17957565 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 68-251
Cow position: chr24:19641243-19641436 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 161

Conread position: 69-478
Cow position: chr24:19469072-19468643 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 76

Conread position: 72-231
Cow position: chr24:36711436-36711603 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 122

Conread position: 87-479
Cow position: chr24:20286362-20285946 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 88-475
Cow position: chr24:13322384-13322792 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 27, 146

Conread position: 142-479
Cow position: chr24:40468781-40469140 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 147-481
Cow position: chr24:12163848-12164193 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 165

Conread position: 158-479
Cow position: chr24:23094396-23094064 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 310

Conread position: 159-473
Cow position: chr24:25438231-25438561 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 314

Conread position: 160-473
Cow position: chr24:39492001-39491675 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 70, 113

Conread position: 167-478
Cow position: chr24:39405078-39404747 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 108

Conread position: 169-449
Cow position: chr24:24074637-24074349 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 38, 43

Conread position: 171-478
Cow position: chr24:30447653-30447967 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 54, 44

Show alignments to all cow chromosomes.