Cow genome map
| Conread name: | rsag15_c7.y1 |
| Conread position: | 2-355 |
| Cow position: | chr25:16431723-16431354 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 12-337 |
| Cow position: | chr25:19408239-19408575 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 293 |
| Conread position: | 14-480 |
| Cow position: | chr25:15365373-15365837 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 17-480 |
| Cow position: | chr25:26928714-26929207 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 18-479 |
| Cow position: | chr25:13772093-13771626 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 131, 5 |
| Conread position: | 18-481 |
| Cow position: | chr25:19921981-19922470 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 19-204 |
| Cow position: | chr25:33614285-33614479 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 140 |
| Conread position: | 19-212 |
| Cow position: | chr25:18192322-18192115 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 19-229 |
| Cow position: | chr25:30266929-30267152 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 19-288 |
| Cow position: | chr25:22148979-22149274 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-300 |
| Cow position: | chr25:17559125-17558820 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 19-337 |
| Cow position: | chr25:18273333-18273006 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 19-343 |
| Cow position: | chr25:18486123-18485779 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 19-362 |
| Cow position: | chr25:12757682-12757311 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 273 |
| Conread position: | 19-366 |
| Cow position: | chr25:13062272-13061899 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-368 |
| Cow position: | chr25:14957017-14956676 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 19-369 |
| Cow position: | chr25:32580960-32581336 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-380 |
| Cow position: | chr25:18450781-18451162 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 19-435 |
| Cow position: | chr25:20346545-20346098 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 19-468 |
| Cow position: | chr25:34345558-34345087 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 130 |
| Conread position: | 19-473 |
| Cow position: | chr25:27523170-27522707 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 19-478 |
| Cow position: | chr25:12941233-12940745 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 19-478 |
| Cow position: | chr25:16924967-16924473 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 19-478 |
| Cow position: | chr25:17655870-17656326 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 19-478 |
| Cow position: | chr25:18178124-18178618 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 19-479 |
| Cow position: | chr25:11041793-11042268 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 19-479 |
| Cow position: | chr25:13693230-13692739 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr25:13782485-13782976 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-479 |
| Cow position: | chr25:19339160-19338671 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 19-479 |
| Cow position: | chr25:20631062-20631552 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 396 |
| Conread position: | 20-244 |
| Cow position: | chr25:21902474-21902712 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 160 |
| Conread position: | 20-478 |
| Cow position: | chr25:11931352-11930864 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 347 |
| Conread position: | 20-478 |
| Cow position: | chr25:18305577-18306074 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 482 |
| Conread position: | 20-479 |
| Cow position: | chr25:18888305-18887815 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 20-479 |
| Cow position: | chr25:25508145-25508631 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 338 |
| Conread position: | 20-481 |
| Cow position: | chr25:23847774-23847315 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 22-477 |
| Cow position: | chr25:18251486-18251024 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 23-217 |
| Cow position: | chr25:20773929-20773721 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 23-479 |
| Cow position: | chr25:30149269-30148801 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 88 |
| Conread position: | 27-480 |
| Cow position: | chr25:35588881-35588405 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 38-479 |
| Cow position: | chr25:24216032-24215573 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 39-478 |
| Cow position: | chr25:17588104-17587640 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 39-479 |
| Cow position: | chr25:27021137-27020669 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 68-477 |
| Cow position: | chr25:34238731-34238322 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 88-480 |
| Cow position: | chr25:2368518-2368919 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 89-231 |
| Cow position: | chr25:11830596-11830447 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 110-476 |
| Cow position: | chr25:35627905-35627526 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 174-479 |
| Cow position: | chr25:28861214-28861536 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 280 |
Show alignments to all cow chromosomes.