Cow genome map

Conread name: rsag15_c7.y1

Conread position: 18-361
Cow position: chr28:21566892-21567252 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 47

Conread position: 19-147
Cow position: chr28:10067895-10067765 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 11, 57

Conread position: 19-167
Cow position: chr28:2117414-2117573 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 19-169
Cow position: chr28:14752220-14752384 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 19-213
Cow position: chr28:5567568-5567767 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 62, 15

Conread position: 19-228
Cow position: chr28:9180052-9180267 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 46, 60

Conread position: 19-231
Cow position: chr28:22041850-22041624 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 52, 0

Conread position: 19-256
Cow position: chr28:5112689-5112438 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 150
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 19-288
Cow position: chr28:5803457-5803748 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 208

Conread position: 19-403
Cow position: chr28:698716-699125 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 24

Conread position: 19-428
Cow position: chr28:7827425-7827853 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 112

Conread position: 19-460
Cow position: chr28:12648239-12647788 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 70

Conread position: 19-468
Cow position: chr28:34595667-34596146 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 356

Conread position: 19-474
Cow position: chr28:14194116-14193651 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 311
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 138, 52

Conread position: 19-475
Cow position: chr28:1216396-1215917 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 387

Conread position: 19-478
Cow position: chr28:7741870-7742352 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 52

Conread position: 19-478
Cow position: chr28:8380472-8380962 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 391

Conread position: 19-478
Cow position: chr28:10615567-10615082 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 215

Conread position: 19-478
Cow position: chr28:17665872-17665402 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 208

Conread position: 19-478
Cow position: chr28:24590292-24590781 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 56

Conread position: 19-479
Cow position: chr28:484158-483668 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr28:1385970-1385486 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 52

Conread position: 19-479
Cow position: chr28:1459530-1460021 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr28:1506302-1506789 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 19-479
Cow position: chr28:1813494-1813014 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 206

Conread position: 19-479
Cow position: chr28:2085900-2086387 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 465

Conread position: 19-479
Cow position: chr28:3190817-3190326 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr28:5938923-5939407 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 396

Conread position: 19-479
Cow position: chr28:6537375-6536877 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 19-479
Cow position: chr28:6778503-6778015 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 19-479
Cow position: chr28:8719517-8719039 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 60

Conread position: 19-479
Cow position: chr28:10580438-10579949 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 55

Conread position: 19-479
Cow position: chr28:12151765-12152246 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 346

Conread position: 19-479
Cow position: chr28:12408790-12408297 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr28:14703950-14703458 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 415

Conread position: 19-479
Cow position: chr28:17381436-17380947 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 98

Conread position: 19-479
Cow position: chr28:17389837-17390329 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr28:18519012-18518517 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr28:26424823-26424335 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 19-480
Cow position: chr28:22259715-22259230 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 306

Conread position: 19-480
Cow position: chr28:32790956-32790472 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 111

Conread position: 19-480
Cow position: chr28:33637977-33638465 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 380

Conread position: 19-481
Cow position: chr28:1954795-1955283 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-482
Cow position: chr28:33253744-33254232 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 302

Conread position: 20-169
Cow position: chr28:10460171-10460017 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 69, 46

Conread position: 20-301
Cow position: chr28:18146304-18146011 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 18

Conread position: 20-393
Cow position: chr28:29821435-29821828 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 67

Conread position: 20-453
Cow position: chr28:5799727-5800196 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 207

Conread position: 20-476
Cow position: chr28:24669038-24669519 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 178

Conread position: 20-478
Cow position: chr28:5766167-5766665 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 55

Conread position: 20-479
Cow position: chr28:1166453-1165972 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 459

Conread position: 20-479
Cow position: chr28:7003434-7003922 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 466

Conread position: 20-479
Cow position: chr28:10471101-10471578 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 230

Conread position: 20-479
Cow position: chr28:11504796-11504315 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 39

Conread position: 20-480
Cow position: chr28:15034675-15034185 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 55

Conread position: 23-480
Cow position: chr28:15587515-15587991 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 314
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 144

Conread position: 23-480
Cow position: chr28:18100056-18099587 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 320
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 124

Conread position: 23-482
Cow position: chr28:784101-784586 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 297

Conread position: 25-368
Cow position: chr28:6786699-6787042 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 124

Conread position: 26-479
Cow position: chr28:29337941-29338409 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 313
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 39, 12

Conread position: 27-453
Cow position: chr28:5814676-5815109 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 83

Conread position: 31-461
Cow position: chr28:24559052-24559508 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 306
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 121

Conread position: 34-478
Cow position: chr28:21360947-21361417 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 78

Conread position: 35-304
Cow position: chr28:11489424-11489134 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 36-478
Cow position: chr28:9288402-9288872 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 38-480
Cow position: chr28:13461425-13461887 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 315

Conread position: 38-481
Cow position: chr28:5750249-5749776 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 377

Conread position: 57-412
Cow position: chr28:25760944-25761321 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 345

Conread position: 59-479
Cow position: chr28:7059186-7058742 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 50

Conread position: 59-479
Cow position: chr28:10496013-10495575 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 49

Conread position: 65-480
Cow position: chr28:7811899-7812344 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 86-350
Cow position: chr28:10645923-10645646 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 44

Conread position: 86-479
Cow position: chr28:22231776-22231366 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 90

Conread position: 88-480
Cow position: chr28:23023743-23024146 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 37

Conread position: 90-290
Cow position: chr28:22236518-22236310 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 91-482
Cow position: chr28:15684983-15685403 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 408

Conread position: 95-479
Cow position: chr28:7028259-7027857 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 266
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 53, 17

Conread position: 110-347
Cow position: chr28:9295815-9295570 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 17

Conread position: 114-453
Cow position: chr28:32359030-32359375 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 57, 23

Conread position: 121-479
Cow position: chr28:10067511-10067139 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 121-479
Cow position: chr28:31591106-31591483 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 322

Conread position: 142-478
Cow position: chr28:34202082-34201734 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 260

Conread position: 147-478
Cow position: chr28:29253214-29253571 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 233
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 289

Conread position: 159-479
Cow position: chr28:24884443-24884771 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 153

Conread position: 160-479
Cow position: chr28:6350414-6350752 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 54, 244

Conread position: 160-480
Cow position: chr28:1772978-1773299 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 27

Conread position: 163-301
Cow position: chr28:2117587-2117737 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 163-394
Cow position: chr28:7828185-7828420 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 195-479
Cow position: chr28:15998728-15999029 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.