Cow genome map

Conread name: rsag15_c7.y1

Conread position: 2-471
Cow position: chr29:19954006-19954487 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 7

Conread position: 11-476
Cow position: chr29:2948983-2948486 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 21

Conread position: 15-390
Cow position: chr29:31547280-31546886 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 258
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 68

Conread position: 15-481
Cow position: chr29:32892177-32892660 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 23

Conread position: 18-185
Cow position: chr29:18855547-18855366 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 18-361
Cow position: chr29:36634974-36634617 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 47

Conread position: 18-444
Cow position: chr29:30259140-30258692 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 305
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 63, 96

Conread position: 18-479
Cow position: chr29:7845788-7846280 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 19-147
Cow position: chr29:3328738-3328876 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 19-157
Cow position: chr29:42093164-42093315 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 19-211
Cow position: chr29:42938793-42938597 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 137

Conread position: 19-231
Cow position: chr29:29502860-29502634 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 48, 0

Conread position: 19-301
Cow position: chr29:15997251-15996959 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 38

Conread position: 19-311
Cow position: chr29:16661407-16661714 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 44

Conread position: 19-358
Cow position: chr29:5958977-5959339 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 19-368
Cow position: chr29:14112946-14113313 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 46

Conread position: 19-369
Cow position: chr29:42803795-42804166 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-370
Cow position: chr29:45461146-45461522 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 19-372
Cow position: chr29:27979521-27979142 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 184

Conread position: 19-476
Cow position: chr29:40501599-40501124 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 19

Conread position: 19-478
Cow position: chr29:19888986-19889471 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 296

Conread position: 19-479
Cow position: chr29:647213-647697 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 19-479
Cow position: chr29:2691562-2692052 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 19-479
Cow position: chr29:2839943-2839451 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 353

Conread position: 19-479
Cow position: chr29:6264601-6264113 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 466

Conread position: 19-479
Cow position: chr29:7429725-7429230 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 19-479
Cow position: chr29:9641387-9640894 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 19-479
Cow position: chr29:10022933-10022442 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr29:13622459-13621968 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr29:13851474-13850992 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 247

Conread position: 19-479
Cow position: chr29:19526887-19526396 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 19-479
Cow position: chr29:19655023-19655508 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 19-479
Cow position: chr29:21431452-21430965 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 29

Conread position: 19-479
Cow position: chr29:26163435-26162946 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 339

Conread position: 19-479
Cow position: chr29:27180354-27179863 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-479
Cow position: chr29:31182807-31183292 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 97

Conread position: 19-479
Cow position: chr29:32558352-32557862 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 454

Conread position: 19-479
Cow position: chr29:37165492-37165957 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 314
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 68, 46

Conread position: 19-479
Cow position: chr29:38228377-38228865 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 422

Conread position: 19-479
Cow position: chr29:39078312-39077822 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 360

Conread position: 19-479
Cow position: chr29:43324922-43325404 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 19

Conread position: 19-480
Cow position: chr29:409849-409371 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 133

Conread position: 19-480
Cow position: chr29:2101238-2101729 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 310

Conread position: 19-480
Cow position: chr29:10822517-10822030 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 198

Conread position: 19-480
Cow position: chr29:14210149-14209661 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 19-480
Cow position: chr29:16023963-16024454 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 40

Conread position: 19-481
Cow position: chr29:8664912-8665395 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 29

Conread position: 19-481
Cow position: chr29:34798412-34797919 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 299

Conread position: 19-481
Cow position: chr29:38207265-38206773 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 450

Conread position: 19-482
Cow position: chr29:5236420-5236916 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 483

Conread position: 19-482
Cow position: chr29:13583480-13583974 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 20-453
Cow position: chr29:3176033-3175593 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 129, 19

Conread position: 20-476
Cow position: chr29:15946419-15945931 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 31

Conread position: 20-478
Cow position: chr29:5981308-5980822 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 149

Conread position: 20-479
Cow position: chr29:14587319-14587814 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 20-479
Cow position: chr29:19621877-19621377 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 20-479
Cow position: chr29:35298310-35298800 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 20-480
Cow position: chr29:16345614-16346091 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 22

Conread position: 20-482
Cow position: chr29:4633224-4632752 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 63

Conread position: 22-428
Cow position: chr29:23977525-23977962 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 23-241
Cow position: chr29:14084722-14084494 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 15

Conread position: 24-479
Cow position: chr29:47050-46572 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 8

Conread position: 27-231
Cow position: chr29:27262309-27262087 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 44, 0

Conread position: 29-479
Cow position: chr29:609230-608758 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 15

Conread position: 34-480
Cow position: chr29:13018112-13018580 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 452

Conread position: 35-479
Cow position: chr29:801172-800723 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 323
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 99

Conread position: 36-476
Cow position: chr29:2747043-2746559 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 406

Conread position: 38-478
Cow position: chr29:32541515-32541984 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 38-479
Cow position: chr29:32287668-32288136 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 159

Conread position: 43-479
Cow position: chr29:32038286-32038718 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 296
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 170

Conread position: 53-482
Cow position: chr29:16172666-16172216 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 116

Conread position: 63-422
Cow position: chr29:45205970-45206363 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 127

Conread position: 65-482
Cow position: chr29:20252619-20253058 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 22

Conread position: 67-481
Cow position: chr29:27812547-27812975 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 90

Conread position: 69-480
Cow position: chr29:34874499-34874915 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 172

Conread position: 86-478
Cow position: chr29:45624865-45625277 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 70

Conread position: 86-479
Cow position: chr29:25931048-25930629 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 325

Conread position: 87-479
Cow position: chr29:2465402-2464987 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 367

Conread position: 87-479
Cow position: chr29:3401412-3401008 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 264
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 325

Conread position: 88-482
Cow position: chr29:29704190-29703770 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 21, 333

Conread position: 104-479
Cow position: chr29:6874375-6873984 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 84

Conread position: 126-479
Cow position: chr29:252480-252847 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 247
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 22, 16

Conread position: 142-480
Cow position: chr29:9082350-9081995 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 26

Conread position: 146-479
Cow position: chr29:17406665-17407014 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 53

Conread position: 154-400
Cow position: chr29:42204645-42204905 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 158-482
Cow position: chr29:17151799-17152147 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 0

Conread position: 160-480
Cow position: chr29:10645856-10645520 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 171-476
Cow position: chr29:21422130-21421811 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 119

Show alignments to all cow chromosomes.