Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-296 |
| Cow position: | chr11:8413185-8413505 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 154 |
| Conread position: | 1-304 |
| Cow position: | chr11:66020225-66019907 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 154 |
| Conread position: | 1-307 |
| Cow position: | chr11:50950319-50950651 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 31, 113 |
| Conread position: | 1-451 |
| Cow position: | chr11:49181118-49181544 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 37 |
| Conread position: | 1-456 |
| Cow position: | chr11:56751977-56751512 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 1-477 |
| Cow position: | chr11:67744732-67745222 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-482 |
| Cow position: | chr11:75254844-75255338 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 1-485 |
| Cow position: | chr11:73513020-73512525 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 1-488 |
| Cow position: | chr11:39114904-39115402 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 15-488 |
| Cow position: | chr11:63157487-63157000 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 135 |
| Conread position: | 37-303 |
| Cow position: | chr11:72291185-72291458 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 39-488 |
| Cow position: | chr11:65694393-65693929 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 43-482 |
| Cow position: | chr11:19890348-19890770 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 45-439 |
| Cow position: | chr11:68415142-68414744 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 55-303 |
| Cow position: | chr11:32655844-32656097 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 55-451 |
| Cow position: | chr11:697704-697299 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 57-419 |
| Cow position: | chr11:67246282-67246643 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 61-304 |
| Cow position: | chr11:18105263-18105015 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 61-316 |
| Cow position: | chr11:75354806-75355061 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 61-486 |
| Cow position: | chr11:43644630-43644194 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 66-288 |
| Cow position: | chr11:2962644-2962864 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 67-431 |
| Cow position: | chr11:40772209-40771851 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 39, 34 |
| Conread position: | 67-448 |
| Cow position: | chr11:9165965-9165588 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 67-458 |
| Cow position: | chr11:44003799-44004176 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 132, 70 |
| Conread position: | 68-488 |
| Cow position: | chr11:17969088-17968674 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 69-283 |
| Cow position: | chr11:8829364-8829145 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-304 |
| Cow position: | chr11:41177145-41176911 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-319 |
| Cow position: | chr11:6877310-6877558 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-359 |
| Cow position: | chr11:51028852-51029131 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-380 |
| Cow position: | chr11:50191731-50191416 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 71 |
| Conread position: | 69-434 |
| Cow position: | chr11:83403479-83403843 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-451 |
| Cow position: | chr11:18140721-18141109 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 86 |
| Conread position: | 69-451 |
| Cow position: | chr11:43509896-43509513 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-453 |
| Cow position: | chr11:25792205-25791822 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-455 |
| Cow position: | chr11:60515477-60515102 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-466 |
| Cow position: | chr11:61846521-61846118 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 52 |
| Conread position: | 69-472 |
| Cow position: | chr11:43361302-43360899 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-481 |
| Cow position: | chr11:40458610-40459017 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 69-487 |
| Cow position: | chr11:25386559-25386971 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-488 |
| Cow position: | chr11:3393722-3393301 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-488 |
| Cow position: | chr11:10991753-10992190 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr11:17831745-17831312 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 8, 75 |
| Conread position: | 69-488 |
| Cow position: | chr11:75480547-75480119 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 70-318 |
| Cow position: | chr11:70248337-70248582 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 70-404 |
| Cow position: | chr11:20804260-20803922 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 97, 68 |
| Conread position: | 70-423 |
| Cow position: | chr11:37727516-37727869 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 70-426 |
| Cow position: | chr11:75378612-75378970 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 70-438 |
| Cow position: | chr11:44529612-44529976 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 70-438 |
| Cow position: | chr11:53203633-53203997 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 70-439 |
| Cow position: | chr11:12939504-12939874 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 70-451 |
| Cow position: | chr11:79132329-79132712 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 70-483 |
| Cow position: | chr11:21798438-21798846 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 71-300 |
| Cow position: | chr11:2282007-2281773 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 76-306 |
| Cow position: | chr11:62881154-62880918 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-460 |
| Cow position: | chr11:57004321-57004692 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 91, 59 |
| Conread position: | 76-466 |
| Cow position: | chr11:58989994-58990393 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 76-485 |
| Cow position: | chr11:59366589-59366179 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 76-487 |
| Cow position: | chr11:47193018-47193427 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 61 |
| Conread position: | 76-488 |
| Cow position: | chr11:1625721-1625315 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 76-488 |
| Cow position: | chr11:8233072-8232660 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 76-488 |
| Cow position: | chr11:42793463-42793064 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 77-488 |
| Cow position: | chr11:951769-952176 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 78-283 |
| Cow position: | chr11:82330605-82330396 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 59 |
| Conread position: | 78-298 |
| Cow position: | chr11:49439355-49439572 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 78-304 |
| Cow position: | chr11:54264476-54264708 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 78-350 |
| Cow position: | chr11:9654048-9653780 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 78-424 |
| Cow position: | chr11:24032425-24032766 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 78-444 |
| Cow position: | chr11:31866097-31866468 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 145, 59 |
| Conread position: | 78-451 |
| Cow position: | chr11:29614793-29615166 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-451 |
| Cow position: | chr11:32455500-32455865 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-461 |
| Cow position: | chr11:15286120-15285738 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-478 |
| Cow position: | chr11:23995242-23995643 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 79-265 |
| Cow position: | chr11:48650256-48650454 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 79-419 |
| Cow position: | chr11:21938184-21937852 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 79-488 |
| Cow position: | chr11:40251109-40250692 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 82-480 |
| Cow position: | chr11:65987715-65988129 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 83-445 |
| Cow position: | chr11:7925089-7924725 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 85-487 |
| Cow position: | chr11:54134746-54134342 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 111-342 |
| Cow position: | chr11:34841666-34841431 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 140-488 |
| Cow position: | chr11:56797176-56796833 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 170-485 |
| Cow position: | chr11:47125156-47125467 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 186-488 |
| Cow position: | chr11:46746237-46746536 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 192-481 |
| Cow position: | chr11:24967073-24967354 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 308-477 |
| Cow position: | chr11:53142486-53142318 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 308-488 |
| Cow position: | chr11:76395505-76395689 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.