Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-289 |
| Cow position: | chr12:30687705-30688001 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 1-466 |
| Cow position: | chr12:18944268-18943784 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 8-351 |
| Cow position: | chr12:7885234-7884904 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 45-461 |
| Cow position: | chr12:25357796-25357366 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 60-451 |
| Cow position: | chr12:9142853-9143244 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 62-418 |
| Cow position: | chr12:38678152-38678516 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 63-466 |
| Cow position: | chr12:39463625-39464029 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 75 |
| Conread position: | 66-450 |
| Cow position: | chr12:10461465-10461849 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 66-460 |
| Cow position: | chr12:488102-488499 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 67-357 |
| Cow position: | chr12:10665642-10665349 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 69-306 |
| Cow position: | chr12:28650381-28650624 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 69-405 |
| Cow position: | chr12:37514761-37514425 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-410 |
| Cow position: | chr12:5273651-5273309 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-428 |
| Cow position: | chr12:31261332-31261696 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-438 |
| Cow position: | chr12:39158822-39158452 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-457 |
| Cow position: | chr12:48437444-48437047 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-472 |
| Cow position: | chr12:19865711-19866105 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 69-476 |
| Cow position: | chr12:1884049-1883631 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 69-488 |
| Cow position: | chr12:27055070-27055499 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-488 |
| Cow position: | chr12:37122984-37123393 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 70-337 |
| Cow position: | chr12:43945088-43944824 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 70-345 |
| Cow position: | chr12:22340791-22341063 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 70-425 |
| Cow position: | chr12:28572172-28572527 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 68 |
| Conread position: | 70-434 |
| Cow position: | chr12:13688554-13688912 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 70-451 |
| Cow position: | chr12:6186432-6186046 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 76-295 |
| Cow position: | chr12:19715874-19715665 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 143, 5 |
| Conread position: | 76-404 |
| Cow position: | chr12:9414291-9413964 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 76-404 |
| Cow position: | chr12:19696882-19697220 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-458 |
| Cow position: | chr12:11082549-11082926 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 76-488 |
| Cow position: | chr12:11835717-11836119 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 87, 55 |
| Conread position: | 77-488 |
| Cow position: | chr12:37770348-37770764 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 58 |
| Conread position: | 78-283 |
| Cow position: | chr12:8718639-8718437 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-302 |
| Cow position: | chr12:32918057-32918280 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-306 |
| Cow position: | chr12:31217912-31218146 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 78-419 |
| Cow position: | chr12:13166974-13166633 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-451 |
| Cow position: | chr12:4718560-4718927 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 78-451 |
| Cow position: | chr12:8656288-8656662 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-451 |
| Cow position: | chr12:21250585-21250212 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 78-458 |
| Cow position: | chr12:18233425-18233046 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 78-469 |
| Cow position: | chr12:27176176-27175800 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 78-469 |
| Cow position: | chr12:27192833-27193209 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 79-306 |
| Cow position: | chr12:20479871-20479633 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 79-381 |
| Cow position: | chr12:25200612-25200312 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 79-451 |
| Cow position: | chr12:34177286-34177648 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 79-470 |
| Cow position: | chr12:4593574-4593970 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 85-449 |
| Cow position: | chr12:27563898-27563539 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 88-459 |
| Cow position: | chr12:35718562-35718206 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 140-470 |
| Cow position: | chr12:42602700-42602370 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 140-488 |
| Cow position: | chr12:17716609-17716966 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 152 |
| Conread position: | 212-476 |
| Cow position: | chr12:35707321-35707060 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 119 |
Show alignments to all cow chromosomes.