Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-280
Cow position: chr13:13577237-13576936 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 154

Conread position: 1-394
Cow position: chr13:11129825-11129419 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 284
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 122

Conread position: 1-427
Cow position: chr13:32825848-32826287 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 149

Conread position: 1-451
Cow position: chr13:21988547-21989006 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 133

Conread position: 1-470
Cow position: chr13:19638864-19639351 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 1-486
Cow position: chr13:21402230-21402735 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 152

Conread position: 1-488
Cow position: chr13:23444240-23444756 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 125

Conread position: 1-488
Cow position: chr13:34282245-34281735 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 155

Conread position: 3-451
Cow position: chr13:11315978-11316461 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 118

Conread position: 3-466
Cow position: chr13:10928440-10928908 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 100

Conread position: 4-274
Cow position: chr13:5431185-5430911 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 135

Conread position: 4-477
Cow position: chr13:9803626-9803140 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 61-299
Cow position: chr13:44323465-44323228 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 77

Conread position: 61-451
Cow position: chr13:7365958-7366348 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 83

Conread position: 61-469
Cow position: chr13:30504943-30504537 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 16, 42

Conread position: 63-441
Cow position: chr13:1639507-1639879 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 76

Conread position: 64-484
Cow position: chr13:34941172-34941589 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 75

Conread position: 66-314
Cow position: chr13:35718136-35718390 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 35

Conread position: 66-424
Cow position: chr13:21135240-21135603 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 132

Conread position: 66-488
Cow position: chr13:25434642-25435061 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 67-334
Cow position: chr13:9559567-9559296 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 54

Conread position: 67-458
Cow position: chr13:34728366-34728744 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 34

Conread position: 67-470
Cow position: chr13:4944910-4945314 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 39

Conread position: 67-486
Cow position: chr13:37483784-37484209 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 70

Conread position: 69-268
Cow position: chr13:60674244-60674446 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 8, 13

Conread position: 69-303
Cow position: chr13:46284110-46284350 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 8, 67

Conread position: 69-313
Cow position: chr13:31580337-31580575 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 118, 68

Conread position: 69-314
Cow position: chr13:43974446-43974201 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 34

Conread position: 69-316
Cow position: chr13:20880176-20880412 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 69-434
Cow position: chr13:8961057-8960704 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 67

Conread position: 69-451
Cow position: chr13:19425428-19425803 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 8, 33

Conread position: 69-453
Cow position: chr13:54068418-54068792 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 257
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 94, 66

Conread position: 69-458
Cow position: chr13:40722205-40722610 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 284
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 62

Conread position: 69-470
Cow position: chr13:34345814-34346214 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 69-477
Cow position: chr13:3015688-3016099 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-481
Cow position: chr13:14716855-14717268 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 69-484
Cow position: chr13:19426220-19426633 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 68

Conread position: 69-485
Cow position: chr13:32773843-32773430 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-486
Cow position: chr13:22085281-22085679 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 15

Conread position: 69-486
Cow position: chr13:31814338-31813932 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 69-488
Cow position: chr13:2414503-2414087 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 285
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 8, 67

Conread position: 69-488
Cow position: chr13:34375734-34375326 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 8, 67

Conread position: 69-488
Cow position: chr13:43762642-43762228 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 297
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 34

Conread position: 70-329
Cow position: chr13:42896428-42896685 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 176
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 110, 67

Conread position: 70-334
Cow position: chr13:51481324-51481065 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 112, 67

Conread position: 70-434
Cow position: chr13:33620697-33621072 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 97, 63

Conread position: 70-447
Cow position: chr13:3970152-3970530 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 66

Conread position: 70-448
Cow position: chr13:4429355-4428974 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 258
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 97, 67

Conread position: 70-486
Cow position: chr13:17800550-17800134 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 67

Conread position: 70-487
Cow position: chr13:25882743-25883164 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 67

Conread position: 71-442
Cow position: chr13:33576438-33576062 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 96, 62

Conread position: 72-485
Cow position: chr13:3701907-3701502 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 276
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 44, 66

Conread position: 76-293
Cow position: chr13:48038597-48038381 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 26

Conread position: 76-304
Cow position: chr13:23856708-23856481 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 123, 18

Conread position: 76-434
Cow position: chr13:46465698-46465349 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 26

Conread position: 76-470
Cow position: chr13:20683655-20684040 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 61

Conread position: 76-475
Cow position: chr13:57769554-57769935 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 261
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 61

Conread position: 76-484
Cow position: chr13:1636478-1636070 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 291
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 91, 64

Conread position: 76-488
Cow position: chr13:971425-971834 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 61

Conread position: 76-488
Cow position: chr13:17820792-17821209 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 57

Conread position: 77-485
Cow position: chr13:12232982-12233392 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 58

Conread position: 78-262
Cow position: chr13:54080032-54080220 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 34

Conread position: 78-314
Cow position: chr13:54094464-54094221 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 59

Conread position: 78-451
Cow position: chr13:2725285-2724912 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 78-451
Cow position: chr13:23456624-23456997 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr13:28413769-28413396 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 78-451
Cow position: chr13:47215784-47216156 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 63

Conread position: 78-454
Cow position: chr13:21231034-21231409 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 59

Conread position: 78-475
Cow position: chr13:2475690-2476087 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 274
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 84, 57

Conread position: 78-488
Cow position: chr13:16015284-16014868 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 292
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 142, 59

Conread position: 78-488
Cow position: chr13:20563460-20563054 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 57

Conread position: 79-316
Cow position: chr13:17567521-17567756 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 141, 54

Conread position: 79-350
Cow position: chr13:1839879-1839600 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 84, 56

Conread position: 79-460
Cow position: chr13:38727028-38727416 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 254
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 58

Conread position: 79-478
Cow position: chr13:28683820-28683434 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 21

Conread position: 79-483
Cow position: chr13:60508655-60509057 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 284
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 22

Conread position: 79-488
Cow position: chr13:34262915-34263310 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 141, 58

Conread position: 79-488
Cow position: chr13:51941202-51940795 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 23

Conread position: 84-488
Cow position: chr13:25062881-25062467 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 99, 56

Conread position: 87-306
Cow position: chr13:52285579-52285368 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 35

Conread position: 102-471
Cow position: chr13:1844682-1845053 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 98, 33

Conread position: 109-488
Cow position: chr13:24767853-24767444 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 28

Conread position: 115-301
Cow position: chr13:12203110-12202928 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 129
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 145-488
Cow position: chr13:19882633-19882977 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 75, 142

Conread position: 163-488
Cow position: chr13:1767160-1766829 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 167

Conread position: 170-470
Cow position: chr13:9974685-9974995 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 22

Conread position: 214-477
Cow position: chr13:18351177-18350911 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 179

Conread position: 219-488
Cow position: chr13:4208489-4208757 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 66

Conread position: 297-478
Cow position: chr13:7262644-7262462 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 138

Show alignments to all cow chromosomes.