Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-289 |
| Cow position: | chr14:24837104-24837416 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 151 |
| Conread position: | 1-292 |
| Cow position: | chr14:23107984-23107682 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-306 |
| Cow position: | chr14:45238912-45239222 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 147 |
| Conread position: | 1-343 |
| Cow position: | chr14:28008428-28008075 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 1-446 |
| Cow position: | chr14:2037330-2037773 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 1-451 |
| Cow position: | chr14:28256959-28257420 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 148 |
| Conread position: | 1-474 |
| Cow position: | chr14:19350953-19350446 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-477 |
| Cow position: | chr14:7812950-7813444 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 136 |
| Conread position: | 1-488 |
| Cow position: | chr14:8488814-8488296 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 1-488 |
| Cow position: | chr14:10091180-10090667 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 1-488 |
| Cow position: | chr14:10907348-10906831 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 1-488 |
| Cow position: | chr14:19957286-19957792 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-488 |
| Cow position: | chr14:20068906-20069400 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 42-480 |
| Cow position: | chr14:37332095-37331655 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 46-394 |
| Cow position: | chr14:46653946-46654287 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 62-291 |
| Cow position: | chr14:20518373-20518135 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 67-425 |
| Cow position: | chr14:35062720-35062359 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 68-286 |
| Cow position: | chr14:23818582-23818805 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 66 |
| Conread position: | 69-303 |
| Cow position: | chr14:4991798-4991558 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-308 |
| Cow position: | chr14:34984377-34984134 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-314 |
| Cow position: | chr14:49421209-49421452 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 69-359 |
| Cow position: | chr14:19887521-19887817 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 69-404 |
| Cow position: | chr14:17756094-17755759 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 69-456 |
| Cow position: | chr14:5501615-5502003 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-465 |
| Cow position: | chr14:22689488-22689081 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-465 |
| Cow position: | chr14:43561547-43561947 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-466 |
| Cow position: | chr14:38143598-38143969 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 68 |
| Conread position: | 69-466 |
| Cow position: | chr14:40462108-40461721 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 278 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-470 |
| Cow position: | chr14:32583653-32583250 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-482 |
| Cow position: | chr14:7960303-7959893 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-482 |
| Cow position: | chr14:19189575-19189160 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-485 |
| Cow position: | chr14:20746108-20745697 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-487 |
| Cow position: | chr14:42918636-42918206 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-488 |
| Cow position: | chr14:8754864-8754444 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-488 |
| Cow position: | chr14:12546053-12546470 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 70-292 |
| Cow position: | chr14:35354841-35354620 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 70-314 |
| Cow position: | chr14:10743063-10742816 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 92, 59 |
| Conread position: | 70-434 |
| Cow position: | chr14:1283294-1283665 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 119, 138 |
| Conread position: | 70-439 |
| Cow position: | chr14:20468688-20469059 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 97, 51 |
| Conread position: | 70-453 |
| Cow position: | chr14:14589081-14589464 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 70-458 |
| Cow position: | chr14:32173316-32172923 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 99, 63 |
| Conread position: | 70-488 |
| Cow position: | chr14:12483782-12484184 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 150, 48 |
| Conread position: | 76-342 |
| Cow position: | chr14:36880275-36880001 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 76-445 |
| Cow position: | chr14:43261766-43262140 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 64 |
| Conread position: | 76-447 |
| Cow position: | chr14:22982416-22982042 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 76-459 |
| Cow position: | chr14:14420016-14419633 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 76-460 |
| Cow position: | chr14:39562419-39562806 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-477 |
| Cow position: | chr14:22047185-22046802 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 76-482 |
| Cow position: | chr14:25886030-25885627 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 277 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 76-487 |
| Cow position: | chr14:39821700-39821278 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 76-488 |
| Cow position: | chr14:20600915-20600501 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 76-488 |
| Cow position: | chr14:34199306-34199733 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 76-488 |
| Cow position: | chr14:36776132-36775727 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 77-456 |
| Cow position: | chr14:42823074-42823472 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 92, 182 |
| Conread position: | 78-314 |
| Cow position: | chr14:39937519-39937755 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-316 |
| Cow position: | chr14:34370900-34371138 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 78-342 |
| Cow position: | chr14:18526943-18526681 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-392 |
| Cow position: | chr14:33834619-33834307 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-396 |
| Cow position: | chr14:38811887-38811566 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 103 |
| Conread position: | 78-451 |
| Cow position: | chr14:10710918-10711291 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-451 |
| Cow position: | chr14:14082292-14081919 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-451 |
| Cow position: | chr14:28988217-28987849 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-451 |
| Cow position: | chr14:34168690-34169059 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-455 |
| Cow position: | chr14:12834230-12834607 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 59 |
| Conread position: | 78-470 |
| Cow position: | chr14:24894284-24893894 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 78-484 |
| Cow position: | chr14:24896062-24896468 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 79-372 |
| Cow position: | chr14:33337660-33337963 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 79-482 |
| Cow position: | chr14:41749247-41749633 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 395, 58 |
| Conread position: | 79-484 |
| Cow position: | chr14:35188160-35187759 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 82-450 |
| Cow position: | chr14:28708550-28708185 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 87-293 |
| Cow position: | chr14:38055771-38055567 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 87-438 |
| Cow position: | chr14:30760726-30760375 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 87-457 |
| Cow position: | chr14:45583686-45584049 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 87-486 |
| Cow position: | chr14:27848717-27848316 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 140-485 |
| Cow position: | chr14:22909279-22909642 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 170-488 |
| Cow position: | chr14:19222320-19221997 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 174-446 |
| Cow position: | chr14:14605483-14605749 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 181-481 |
| Cow position: | chr14:22989462-22989159 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 230 |
Show alignments to all cow chromosomes.