Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-304
Cow position: chr15:21453652-21453979 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 117

Conread position: 1-359
Cow position: chr15:5913294-5912900 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 31, 124

Conread position: 1-470
Cow position: chr15:15040768-15041250 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 155

Conread position: 1-488
Cow position: chr15:7962750-7962243 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 23

Conread position: 1-488
Cow position: chr15:33681328-33680815 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 137

Conread position: 5-479
Cow position: chr15:47634753-47634259 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 122

Conread position: 37-293
Cow position: chr15:21803020-21803271 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 169
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 190, 8

Conread position: 54-488
Cow position: chr15:21388574-21389006 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 82

Conread position: 55-321
Cow position: chr15:10454448-10454181 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 8

Conread position: 55-488
Cow position: chr15:5234407-5234841 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 81

Conread position: 57-487
Cow position: chr15:41087268-41087700 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 82

Conread position: 60-289
Cow position: chr15:21894409-21894182 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 78

Conread position: 61-400
Cow position: chr15:8061566-8061910 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 63-484
Cow position: chr15:24821789-24822212 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 29

Conread position: 66-311
Cow position: chr15:51909939-51909686 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 38

Conread position: 66-482
Cow position: chr15:39363424-39363848 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 137

Conread position: 67-451
Cow position: chr15:3007456-3007073 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 35

Conread position: 67-451
Cow position: chr15:6290612-6290989 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 258
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 40

Conread position: 67-453
Cow position: chr15:9038528-9038138 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 102, 70

Conread position: 68-306
Cow position: chr15:24993922-24994156 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 34

Conread position: 69-292
Cow position: chr15:27967045-27966818 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 38

Conread position: 69-295
Cow position: chr15:14855867-14856093 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 8, 67

Conread position: 69-296
Cow position: chr15:16515701-16515920 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 19

Conread position: 69-300
Cow position: chr15:35824776-35825007 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 65

Conread position: 69-306
Cow position: chr15:35416988-35417225 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 8, 67

Conread position: 69-316
Cow position: chr15:34036416-34036661 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 8, 69

Conread position: 69-324
Cow position: chr15:10243507-10243761 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 34

Conread position: 69-350
Cow position: chr15:25907809-25907535 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 69

Conread position: 69-389
Cow position: chr15:10839346-10839658 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 8, 69

Conread position: 69-441
Cow position: chr15:35052828-35052460 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 8, 204

Conread position: 69-450
Cow position: chr15:2445116-2444739 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 246
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 34

Conread position: 69-450
Cow position: chr15:19326665-19326284 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 265
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 8, 64

Conread position: 69-450
Cow position: chr15:23567541-23567916 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 32

Conread position: 69-451
Cow position: chr15:21967630-21968024 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 261
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 8, 34

Conread position: 69-451
Cow position: chr15:25666632-25667019 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-458
Cow position: chr15:32475995-32475603 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 69-458
Cow position: chr15:37382206-37381824 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 8, 69

Conread position: 69-466
Cow position: chr15:22095690-22095314 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 69

Conread position: 69-466
Cow position: chr15:34206618-34207000 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 266
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 8, 69

Conread position: 69-470
Cow position: chr15:17260581-17260976 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 8, 69

Conread position: 69-477
Cow position: chr15:16741444-16741866 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-480
Cow position: chr15:4374068-4373642 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 75

Conread position: 69-486
Cow position: chr15:7191674-7192093 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 69-488
Cow position: chr15:143650-144074 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr15:5498449-5498869 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr15:6530255-6530685 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 65

Conread position: 69-488
Cow position: chr15:9643034-9642592 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 69-488
Cow position: chr15:11958134-11957703 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 299
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 7, 67

Conread position: 69-488
Cow position: chr15:14506007-14505588 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 22

Conread position: 69-488
Cow position: chr15:30046954-30047380 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 70-432
Cow position: chr15:12351143-12351499 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 241
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 97, 67

Conread position: 70-434
Cow position: chr15:40016127-40016497 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 240
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 102, 65

Conread position: 70-458
Cow position: chr15:22561351-22561735 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 252
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 70

Conread position: 70-488
Cow position: chr15:6970558-6970151 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 32

Conread position: 76-296
Cow position: chr15:16927476-16927696 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 61

Conread position: 76-318
Cow position: chr15:15215875-15215630 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 91, 57

Conread position: 76-334
Cow position: chr15:33740538-33740803 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 93, 66

Conread position: 76-345
Cow position: chr15:33511419-33511150 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 56

Conread position: 76-352
Cow position: chr15:10442017-10442292 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 76-442
Cow position: chr15:23103258-23103626 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 251
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 27

Conread position: 76-457
Cow position: chr15:24968362-24967992 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 76-458
Cow position: chr15:7953718-7954107 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 97, 64

Conread position: 76-485
Cow position: chr15:13669330-13669735 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 56

Conread position: 76-488
Cow position: chr15:1329531-1329940 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 61

Conread position: 76-488
Cow position: chr15:26078793-26079199 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 59

Conread position: 77-476
Cow position: chr15:581878-582275 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 60

Conread position: 77-486
Cow position: chr15:1082813-1083211 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 285
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 105, 60

Conread position: 77-486
Cow position: chr15:1128556-1128159 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 105, 60

Conread position: 78-321
Cow position: chr15:52154165-52154406 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 61

Conread position: 78-328
Cow position: chr15:36355344-36355099 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 59

Conread position: 78-329
Cow position: chr15:21910685-21910451 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 135, 59

Conread position: 78-426
Cow position: chr15:26735181-26734839 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 94, 10

Conread position: 78-441
Cow position: chr15:28913-28550 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 251
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 32, 24

Conread position: 78-445
Cow position: chr15:3720008-3719641 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:5640195-5639823 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:22545238-22544865 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:29017984-29018357 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:31489448-31489821 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 78-451
Cow position: chr15:37395098-37395471 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:42584603-42584976 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr15:42595154-42595515 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 24

Conread position: 78-454
Cow position: chr15:20390129-20390501 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 93, 57

Conread position: 78-465
Cow position: chr15:442394-442007 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 28, 24

Conread position: 78-486
Cow position: chr15:41583488-41583079 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 59

Conread position: 78-488
Cow position: chr15:9267485-9267890 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 48

Conread position: 79-451
Cow position: chr15:12859538-12859908 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 81-418
Cow position: chr15:10120542-10120215 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 21

Conread position: 81-451
Cow position: chr15:21695603-21695971 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 56

Conread position: 86-306
Cow position: chr15:47340744-47340519 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 49

Conread position: 87-488
Cow position: chr15:25208203-25208600 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 50

Conread position: 87-488
Cow position: chr15:36781745-36782165 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 292
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 112, 50

Conread position: 89-437
Cow position: chr15:16303609-16303261 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 235
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 78, 45

Conread position: 186-294
Cow position: chr15:3572208-3572316 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 186-488
Cow position: chr15:5722211-5722505 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 171

Conread position: 266-478
Cow position: chr15:9177825-9178033 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 171
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 33, 139

Conread position: 310-485
Cow position: chr15:26673250-26673424 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 18, 90

Show alignments to all cow chromosomes.