Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-280
Cow position: chr16:8000402-8000704 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 153

Conread position: 1-284
Cow position: chr16:4979101-4979401 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 116

Conread position: 1-314
Cow position: chr16:50368587-50368275 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 20

Conread position: 1-380
Cow position: chr16:20259845-20260257 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 156

Conread position: 1-451
Cow position: chr16:24128121-24128590 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 152

Conread position: 1-458
Cow position: chr16:49126759-49126293 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 151

Conread position: 1-461
Cow position: chr16:31974333-31973882 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 312
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 58, 27

Conread position: 1-487
Cow position: chr16:31418862-31419368 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 1-488
Cow position: chr16:237669-238192 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 93

Conread position: 2-274
Cow position: chr16:29512723-29513008 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 144

Conread position: 3-311
Cow position: chr16:15805256-15805578 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 152

Conread position: 8-488
Cow position: chr16:32838113-32837621 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 113

Conread position: 12-451
Cow position: chr16:7355128-7355557 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 300
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 24, 74

Conread position: 16-283
Cow position: chr16:38177736-38178019 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 6

Conread position: 48-466
Cow position: chr16:51710636-51710228 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 17

Conread position: 57-432
Cow position: chr16:19015462-19015080 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 255
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 82

Conread position: 58-254
Cow position: chr16:3111651-3111849 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 9, 80

Conread position: 58-487
Cow position: chr16:13601595-13601155 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 11, 80

Conread position: 60-447
Cow position: chr16:47242452-47242841 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 271
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 17, 78

Conread position: 60-458
Cow position: chr16:51481081-51481479 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 76

Conread position: 61-380
Cow position: chr16:20406783-20406465 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 216
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 74

Conread position: 61-451
Cow position: chr16:55270262-55270644 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 76

Conread position: 63-488
Cow position: chr16:33704305-33704733 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 304
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 40

Conread position: 65-477
Cow position: chr16:15408374-15407968 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 70

Conread position: 66-434
Cow position: chr16:53214580-53214946 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 237
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 72

Conread position: 67-445
Cow position: chr16:17394173-17393810 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 96, 70

Conread position: 67-451
Cow position: chr16:25263654-25264038 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 264
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 100, 66

Conread position: 67-460
Cow position: chr16:20668853-20669257 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 273
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 96, 51

Conread position: 67-470
Cow position: chr16:4972520-4972116 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 70

Conread position: 69-296
Cow position: chr16:12244099-12243863 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 7, 34

Conread position: 69-303
Cow position: chr16:19976348-19976583 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 10, 50

Conread position: 69-306
Cow position: chr16:53612783-53613024 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 8, 33

Conread position: 69-312
Cow position: chr16:1563349-1563107 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 69

Conread position: 69-316
Cow position: chr16:16057323-16057067 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 34

Conread position: 69-323
Cow position: chr16:3596996-3596746 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 65

Conread position: 69-348
Cow position: chr16:12087140-12086872 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 33

Conread position: 69-404
Cow position: chr16:25174272-25174596 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 229
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 69

Conread position: 69-444
Cow position: chr16:24926084-24926463 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 33

Conread position: 69-451
Cow position: chr16:43537244-43537627 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 66

Conread position: 69-458
Cow position: chr16:15255443-15255063 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 8, 69

Conread position: 69-466
Cow position: chr16:18678704-18679097 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 270
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 7, 33

Conread position: 69-470
Cow position: chr16:23532963-23532560 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 69-470
Cow position: chr16:25444914-25445317 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 69-470
Cow position: chr16:31122748-31122341 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-470
Cow position: chr16:39646066-39646455 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 8, 69

Conread position: 69-477
Cow position: chr16:30311599-30311198 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-486
Cow position: chr16:51500440-51500854 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 69-488
Cow position: chr16:18205467-18205887 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 301
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr16:28112414-28111993 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 66

Conread position: 69-488
Cow position: chr16:29158638-29159058 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr16:35187755-35188181 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 125

Conread position: 69-488
Cow position: chr16:40561732-40562157 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 69-488
Cow position: chr16:41753075-41752646 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr16:48370443-48370024 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 8, 69

Conread position: 70-293
Cow position: chr16:2307945-2308169 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 7, 99

Conread position: 70-301
Cow position: chr16:46654659-46654889 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 7, 66

Conread position: 70-336
Cow position: chr16:31694564-31694837 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 187
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 99, 63

Conread position: 70-438
Cow position: chr16:34209387-34209758 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 99, 67

Conread position: 70-439
Cow position: chr16:41527881-41528244 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 233
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 105, 68

Conread position: 70-442
Cow position: chr16:12546839-12546453 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 247
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 72, 48

Conread position: 70-442
Cow position: chr16:19333637-19334009 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 90, 70

Conread position: 70-447
Cow position: chr16:50712400-50712022 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 70-462
Cow position: chr16:14089261-14088878 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 256
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 95, 65

Conread position: 70-473
Cow position: chr16:27106421-27106831 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 67

Conread position: 70-488
Cow position: chr16:18354438-18354026 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 295
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 7, 66

Conread position: 76-314
Cow position: chr16:32780897-32781141 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 25

Conread position: 76-326
Cow position: chr16:49578302-49578559 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 180
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 30, 25

Conread position: 76-331
Cow position: chr16:27004666-27004928 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 54, 24

Conread position: 76-340
Cow position: chr16:49449832-49449569 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 123, 64

Conread position: 76-404
Cow position: chr16:22919011-22919338 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 49

Conread position: 76-451
Cow position: chr16:42079324-42078955 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 61

Conread position: 76-451
Cow position: chr16:53770132-53769762 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 59

Conread position: 76-458
Cow position: chr16:29966994-29967372 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 59

Conread position: 76-458
Cow position: chr16:48087355-48086981 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 59

Conread position: 76-459
Cow position: chr16:39474623-39474244 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 61

Conread position: 76-464
Cow position: chr16:18141810-18141439 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 57

Conread position: 76-488
Cow position: chr16:31978674-31978258 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 61

Conread position: 76-488
Cow position: chr16:39616261-39616669 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 59

Conread position: 76-488
Cow position: chr16:40333807-40333400 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 77-356
Cow position: chr16:12070344-12070045 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 24

Conread position: 77-451
Cow position: chr16:29654837-29655214 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 24

Conread position: 78-293
Cow position: chr16:49515737-49515523 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 59

Conread position: 78-297
Cow position: chr16:4498888-4499111 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 91, 59

Conread position: 78-451
Cow position: chr16:9212076-9212447 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 78-451
Cow position: chr16:16942764-16943137 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr16:20234582-20234208 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 24

Conread position: 78-451
Cow position: chr16:49218044-49217673 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 59

Conread position: 78-454
Cow position: chr16:42161878-42161502 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-460
Cow position: chr16:46827898-46827508 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 263
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 91, 111

Conread position: 78-470
Cow position: chr16:45609502-45609895 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 57

Conread position: 78-488
Cow position: chr16:7075425-7075840 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 282
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 141, 56

Conread position: 78-488
Cow position: chr16:11105071-11105479 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 28, 23

Conread position: 78-488
Cow position: chr16:21095967-21095559 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 59

Conread position: 78-488
Cow position: chr16:39394103-39394503 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 54

Conread position: 79-488
Cow position: chr16:14758233-14758660 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 287
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 145, 56

Conread position: 170-451
Cow position: chr16:56981764-56981474 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 54, 9

Conread position: 179-481
Cow position: chr16:9846099-9845790 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 117

Conread position: 308-487
Cow position: chr16:28267265-28267087 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 149, 23

Show alignments to all cow chromosomes.