Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-306 |
| Cow position: | chr17:15722103-15722417 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 1-306 |
| Cow position: | chr17:20215592-20215922 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-306 |
| Cow position: | chr17:44233622-44233304 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 120 |
| Conread position: | 1-315 |
| Cow position: | chr17:11654671-11654997 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 36, 141 |
| Conread position: | 1-351 |
| Cow position: | chr17:4107551-4107191 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 1-351 |
| Cow position: | chr17:4123287-4122926 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 1-387 |
| Cow position: | chr17:18569439-18569039 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 300 |
| Conread position: | 1-451 |
| Cow position: | chr17:7396778-7396311 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 1-451 |
| Cow position: | chr17:10843785-10844239 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 157 |
| Conread position: | 1-451 |
| Cow position: | chr17:15187790-15187330 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 1-462 |
| Cow position: | chr17:5748348-5747856 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-486 |
| Cow position: | chr17:15364099-15363600 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 148 |
| Conread position: | 1-488 |
| Cow position: | chr17:8926774-8926248 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-488 |
| Cow position: | chr17:28359288-28359813 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 14-481 |
| Cow position: | chr17:28467262-28467743 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 16-453 |
| Cow position: | chr17:41919536-41919975 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 61-450 |
| Cow position: | chr17:31310692-31310296 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 61-458 |
| Cow position: | chr17:33370678-33370275 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 62-488 |
| Cow position: | chr17:5896373-5895943 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 77 |
| Conread position: | 63-309 |
| Cow position: | chr17:25140792-25141037 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 63-488 |
| Cow position: | chr17:22563730-22564149 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 64-292 |
| Cow position: | chr17:13989698-13989464 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 66-314 |
| Cow position: | chr17:44030137-44030385 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 67-481 |
| Cow position: | chr17:2151737-2152145 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 67-488 |
| Cow position: | chr17:23337469-23337049 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 69-282 |
| Cow position: | chr17:37415320-37415108 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 69-284 |
| Cow position: | chr17:24334234-24334449 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-294 |
| Cow position: | chr17:38363717-38363486 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 69-316 |
| Cow position: | chr17:32977649-32977404 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 69-351 |
| Cow position: | chr17:3131606-3131892 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 69-400 |
| Cow position: | chr17:2270310-2270647 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-408 |
| Cow position: | chr17:1456692-1456347 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 64 |
| Conread position: | 69-439 |
| Cow position: | chr17:29274471-29274841 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 69-447 |
| Cow position: | chr17:21481786-21482165 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 69-451 |
| Cow position: | chr17:27053315-27053700 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 8, 113 |
| Conread position: | 69-481 |
| Cow position: | chr17:13935570-13935159 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr17:17221892-17222312 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr17:25167848-25168286 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 118 |
| Conread position: | 70-438 |
| Cow position: | chr17:9660729-9660362 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 70-459 |
| Cow position: | chr17:7251598-7251984 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 70-469 |
| Cow position: | chr17:30539700-30539308 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 67 |
| Conread position: | 70-488 |
| Cow position: | chr17:25542258-25541853 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 76-294 |
| Cow position: | chr17:32472275-32472058 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 144, 61 |
| Conread position: | 76-296 |
| Cow position: | chr17:30712595-30712814 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 76-303 |
| Cow position: | chr17:6423282-6423506 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 76-347 |
| Cow position: | chr17:40105122-40104846 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 64 |
| Conread position: | 76-451 |
| Cow position: | chr17:11767724-11768104 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-451 |
| Cow position: | chr17:36197176-36197551 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-470 |
| Cow position: | chr17:24823820-24824193 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 76-470 |
| Cow position: | chr17:27305720-27306104 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 76-477 |
| Cow position: | chr17:16463559-16463152 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 76-487 |
| Cow position: | chr17:6082102-6082497 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 76-488 |
| Cow position: | chr17:44862252-44861829 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 77-401 |
| Cow position: | chr17:26510282-26509961 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 78-437 |
| Cow position: | chr17:11913143-11912788 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-451 |
| Cow position: | chr17:7585027-7585400 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-451 |
| Cow position: | chr17:16505138-16504768 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 78-451 |
| Cow position: | chr17:32293192-32292814 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 78-456 |
| Cow position: | chr17:5246438-5246826 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 78-458 |
| Cow position: | chr17:30410861-30410471 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 78-466 |
| Cow position: | chr17:20269169-20269543 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 78-470 |
| Cow position: | chr17:139223-139612 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 78-488 |
| Cow position: | chr17:20780076-20780478 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 79-399 |
| Cow position: | chr17:30727832-30728148 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 79-447 |
| Cow position: | chr17:26476709-26477074 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 79-451 |
| Cow position: | chr17:17266789-17266418 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 252 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 79-466 |
| Cow position: | chr17:1410686-1410298 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 58 |
| Conread position: | 80-450 |
| Cow position: | chr17:3154210-3153843 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 82-427 |
| Cow position: | chr17:30810457-30810807 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 87-488 |
| Cow position: | chr17:20022944-20022549 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 50 |
| Conread position: | 89-303 |
| Cow position: | chr17:9060451-9060232 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 91-470 |
| Cow position: | chr17:13144112-13143745 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 94-488 |
| Cow position: | chr17:11056803-11056403 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 192-394 |
| Cow position: | chr17:29081499-29081689 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 297-485 |
| Cow position: | chr17:20215947-20216130 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 181, 99 |
Show alignments to all cow chromosomes.