Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-278
Cow position: chr18:28793694-28793389 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 139

Conread position: 1-345
Cow position: chr18:10100841-10101215 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 154

Conread position: 1-357
Cow position: chr18:50789465-50789825 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 32

Conread position: 1-368
Cow position: chr18:54274649-54275037 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 118

Conread position: 1-466
Cow position: chr18:15485213-15484721 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 334
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 31, 118

Conread position: 1-487
Cow position: chr18:25003479-25002987 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 97

Conread position: 1-488
Cow position: chr18:12118456-12117948 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 120

Conread position: 1-488
Cow position: chr18:43464035-43463515 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 4-485
Cow position: chr18:32860037-32860530 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 113

Conread position: 35-427
Cow position: chr18:20226709-20226311 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 25

Conread position: 60-488
Cow position: chr18:33274759-33275205 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 61-296
Cow position: chr18:1144747-1144512 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 73

Conread position: 62-283
Cow position: chr18:48548624-48548842 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 8, 61

Conread position: 66-451
Cow position: chr18:23619090-23619486 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 265
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 11, 70

Conread position: 66-487
Cow position: chr18:50082756-50082359 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 67-434
Cow position: chr18:17454196-17453842 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 243
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 132, 70

Conread position: 67-466
Cow position: chr18:55119343-55119749 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 96

Conread position: 68-352
Cow position: chr18:33609709-33609989 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 69

Conread position: 69-304
Cow position: chr18:33158343-33158584 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 33

Conread position: 69-306
Cow position: chr18:36649196-36649438 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 33

Conread position: 69-314
Cow position: chr18:28292285-28292039 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 8, 34

Conread position: 69-315
Cow position: chr18:1955050-1954804 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 8, 34

Conread position: 69-315
Cow position: chr18:33157264-33157503 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 8, 69

Conread position: 69-316
Cow position: chr18:249411-249149 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 69-326
Cow position: chr18:31563124-31562861 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 69

Conread position: 69-333
Cow position: chr18:6829590-6829324 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 8, 67

Conread position: 69-350
Cow position: chr18:48451148-48451432 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 8, 58

Conread position: 69-398
Cow position: chr18:43950314-43950646 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 8, 67

Conread position: 69-451
Cow position: chr18:10107167-10107539 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 263
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 47, 67

Conread position: 69-451
Cow position: chr18:22275568-22275183 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 8, 69

Conread position: 69-453
Cow position: chr18:38090111-38089707 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 8, 69

Conread position: 69-458
Cow position: chr18:42966312-42966716 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-459
Cow position: chr18:54031178-54031570 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-470
Cow position: chr18:19159487-19159099 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 69-485
Cow position: chr18:9089186-9089590 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 8, 53

Conread position: 69-488
Cow position: chr18:13173052-13172622 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-488
Cow position: chr18:28658434-28658015 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 281
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 8, 66

Conread position: 69-488
Cow position: chr18:37002109-37002527 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 33

Conread position: 69-488
Cow position: chr18:44262089-44262520 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 70-287
Cow position: chr18:6742257-6742037 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 71, 95

Conread position: 70-344
Cow position: chr18:37861966-37861677 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 189
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 70-360
Cow position: chr18:23079346-23079056 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 67

Conread position: 70-410
Cow position: chr18:54065258-54064916 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 223
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 7, 68

Conread position: 70-442
Cow position: chr18:40078386-40078019 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 249
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 40, 32

Conread position: 70-451
Cow position: chr18:18056803-18056424 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 262
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 93, 65

Conread position: 70-451
Cow position: chr18:22181631-22181251 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 258
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 36, 32

Conread position: 70-453
Cow position: chr18:14404097-14403713 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 254
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 104, 67

Conread position: 70-453
Cow position: chr18:24712199-24711812 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 93, 70

Conread position: 75-466
Cow position: chr18:29387718-29388087 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 62

Conread position: 76-301
Cow position: chr18:25206815-25206592 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 148, 61

Conread position: 76-306
Cow position: chr18:11680173-11680401 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 144, 41

Conread position: 76-322
Cow position: chr18:29759200-29759453 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 142, 61

Conread position: 76-404
Cow position: chr18:19193863-19193542 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 33, 26

Conread position: 76-451
Cow position: chr18:10082357-10082724 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 264
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 30

Conread position: 76-454
Cow position: chr18:20125790-20126161 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 123, 61

Conread position: 76-457
Cow position: chr18:22065885-22065501 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 76-457
Cow position: chr18:23631096-23630713 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 59

Conread position: 76-466
Cow position: chr18:29648271-29648653 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 56

Conread position: 76-470
Cow position: chr18:47183808-47183411 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 79

Conread position: 76-472
Cow position: chr18:14815859-14815467 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 26

Conread position: 76-474
Cow position: chr18:45478416-45478801 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 45

Conread position: 76-477
Cow position: chr18:54574836-54574434 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 76-481
Cow position: chr18:17341767-17342179 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 272
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 67, 189

Conread position: 76-486
Cow position: chr18:33299390-33299789 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 275
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 42, 62

Conread position: 76-488
Cow position: chr18:11376847-11377258 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 61

Conread position: 76-488
Cow position: chr18:29058998-29058600 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 313, 36

Conread position: 77-454
Cow position: chr18:7076253-7076625 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 60

Conread position: 78-295
Cow position: chr18:28929614-28929397 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 142, 66

Conread position: 78-296
Cow position: chr18:33883454-33883226 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 78-314
Cow position: chr18:33523063-33523300 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 109, 59

Conread position: 78-405
Cow position: chr18:53829675-53829351 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 24

Conread position: 78-417
Cow position: chr18:51191268-51190932 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 142, 57

Conread position: 78-429
Cow position: chr18:16378454-16378805 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 100, 59

Conread position: 78-451
Cow position: chr18:11251551-11251178 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 23

Conread position: 78-451
Cow position: chr18:21609333-21608954 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr18:41238356-41238724 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 255
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 109, 59

Conread position: 78-466
Cow position: chr18:45904413-45904026 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 57

Conread position: 78-470
Cow position: chr18:32218769-32218380 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 259
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 142, 59

Conread position: 78-470
Cow position: chr18:35012821-35012436 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 59

Conread position: 78-484
Cow position: chr18:7964715-7965121 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 59

Conread position: 78-487
Cow position: chr18:37334596-37334992 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 130, 57

Conread position: 78-488
Cow position: chr18:13292993-13293404 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 79-294
Cow position: chr18:50092616-50092402 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 144, 62

Conread position: 82-296
Cow position: chr18:23137728-23137511 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 81, 53

Conread position: 82-459
Cow position: chr18:52595884-52596251 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 88-451
Cow position: chr18:49059193-49059550 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 240
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 46

Conread position: 135-488
Cow position: chr18:16418156-16417809 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 152

Conread position: 140-458
Cow position: chr18:52635539-52635225 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 211

Conread position: 181-488
Cow position: chr18:51500494-51500180 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 20, 12

Show alignments to all cow chromosomes.