Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-281 |
| Cow position: | chr19:9704451-9704147 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 1-451 |
| Cow position: | chr19:44488775-44489240 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-485 |
| Cow position: | chr19:33593764-33593289 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 349 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 63 |
| Conread position: | 1-487 |
| Cow position: | chr19:24688702-24689196 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 1-488 |
| Cow position: | chr19:2820993-2821497 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 1-488 |
| Cow position: | chr19:6556354-6556869 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 137 |
| Conread position: | 1-488 |
| Cow position: | chr19:38392208-38392717 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 1-488 |
| Cow position: | chr19:39987152-39986630 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 389 |
| Conread position: | 10-488 |
| Cow position: | chr19:21285676-21285159 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 14-289 |
| Cow position: | chr19:52305474-52305204 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 27-451 |
| Cow position: | chr19:29394088-29394512 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 60-311 |
| Cow position: | chr19:20433425-20433175 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 61-424 |
| Cow position: | chr19:9582794-9583162 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 138, 76 |
| Conread position: | 63-314 |
| Cow position: | chr19:15245616-15245359 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 66-488 |
| Cow position: | chr19:35782628-35782216 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 68-448 |
| Cow position: | chr19:24928110-24927738 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 68-451 |
| Cow position: | chr19:29089701-29090088 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 73 |
| Conread position: | 69-304 |
| Cow position: | chr19:30551542-30551777 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-306 |
| Cow position: | chr19:51645043-51644804 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-307 |
| Cow position: | chr19:39602659-39602406 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 69-316 |
| Cow position: | chr19:53801752-53801503 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-323 |
| Cow position: | chr19:55246942-55247192 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-331 |
| Cow position: | chr19:5043872-5043614 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 69-352 |
| Cow position: | chr19:42571756-42571474 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-368 |
| Cow position: | chr19:49358887-49358594 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-404 |
| Cow position: | chr19:13635534-13635870 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-451 |
| Cow position: | chr19:23045277-23045666 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-457 |
| Cow position: | chr19:3084711-3084328 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 69-470 |
| Cow position: | chr19:37562509-37562107 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 69-470 |
| Cow position: | chr19:44144414-44144021 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 116 |
| Conread position: | 69-471 |
| Cow position: | chr19:43733232-43733648 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-481 |
| Cow position: | chr19:33674860-33674425 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-488 |
| Cow position: | chr19:18786831-18786408 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr19:32450559-32450996 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 69-488 |
| Cow position: | chr19:38843049-38842640 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 70-400 |
| Cow position: | chr19:3584370-3584052 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 70-438 |
| Cow position: | chr19:6177109-6177484 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 111, 143 |
| Conread position: | 70-445 |
| Cow position: | chr19:16692083-16692459 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 70-447 |
| Cow position: | chr19:48426122-48425766 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 70-451 |
| Cow position: | chr19:10948118-10947732 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 70-456 |
| Cow position: | chr19:30435694-30436103 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 70-462 |
| Cow position: | chr19:24671511-24671120 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 123, 58 |
| Conread position: | 70-477 |
| Cow position: | chr19:4991001-4991402 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 230 |
| Conread position: | 70-488 |
| Cow position: | chr19:31396401-31395978 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 72-333 |
| Cow position: | chr19:26651433-26651703 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-313 |
| Cow position: | chr19:56312172-56312411 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 92, 75 |
| Conread position: | 76-317 |
| Cow position: | chr19:10212885-10213125 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 144, 61 |
| Conread position: | 76-359 |
| Cow position: | chr19:25289069-25288779 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 143, 21 |
| Conread position: | 76-367 |
| Cow position: | chr19:9093514-9093214 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 87, 48 |
| Conread position: | 76-400 |
| Cow position: | chr19:34287314-34287640 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-464 |
| Cow position: | chr19:14572869-14573264 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 76-466 |
| Cow position: | chr19:42664318-42663932 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 76-485 |
| Cow position: | chr19:34956193-34955787 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 53 |
| Conread position: | 76-488 |
| Cow position: | chr19:2771513-2771097 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 76-488 |
| Cow position: | chr19:5185745-5185329 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 141, 8 |
| Conread position: | 76-488 |
| Cow position: | chr19:6079882-6079444 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 81 |
| Conread position: | 78-316 |
| Cow position: | chr19:33509245-33509008 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 78-367 |
| Cow position: | chr19:55011409-55011697 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 59 |
| Conread position: | 78-451 |
| Cow position: | chr19:42304784-42304411 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-456 |
| Cow position: | chr19:8127828-8128197 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 78-466 |
| Cow position: | chr19:3249537-3249147 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 78-477 |
| Cow position: | chr19:35064712-35064290 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 79-286 |
| Cow position: | chr19:11376928-11376722 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 87-475 |
| Cow position: | chr19:11817415-11817034 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 50 |
| Conread position: | 166-295 |
| Cow position: | chr19:15442211-15442341 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 199-486 |
| Cow position: | chr19:16594520-16594810 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 219-487 |
| Cow position: | chr19:44757971-44757703 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 194 |
| Conread position: | 331-488 |
| Cow position: | chr19:44366785-44366936 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 71 |
Show alignments to all cow chromosomes.