Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-273 |
| Cow position: | chr20:32938993-32939279 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 1-281 |
| Cow position: | chr20:20360352-20360049 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 1-286 |
| Cow position: | chr20:7183254-7182941 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 156 |
| Conread position: | 1-288 |
| Cow position: | chr20:20471184-20471490 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 1-290 |
| Cow position: | chr20:34776595-34776905 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 1-340 |
| Cow position: | chr20:20546092-20546453 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 31, 185 |
| Conread position: | 1-359 |
| Cow position: | chr20:7527899-7527521 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 1-390 |
| Cow position: | chr20:19340609-19340197 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 1-470 |
| Cow position: | chr20:8482739-8482258 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 1-488 |
| Cow position: | chr20:6258591-6258091 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 147 |
| Conread position: | 1-488 |
| Cow position: | chr20:13048957-13048444 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 8-467 |
| Cow position: | chr20:38028530-38028058 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 148 |
| Conread position: | 15-319 |
| Cow position: | chr20:1191386-1191691 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 46, 127 |
| Conread position: | 37-317 |
| Cow position: | chr20:32084701-32084421 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 41-481 |
| Cow position: | chr20:13269148-13269587 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 53-319 |
| Cow position: | chr20:7568047-7567773 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 53-319 |
| Cow position: | chr20:7592533-7592259 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 60-314 |
| Cow position: | chr20:26078860-26078619 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 60-488 |
| Cow position: | chr20:19363821-19363394 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 61-278 |
| Cow position: | chr20:4911631-4911847 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 61-468 |
| Cow position: | chr20:34836323-34835922 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 64-488 |
| Cow position: | chr20:10818681-10818258 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 75 |
| Conread position: | 66-291 |
| Cow position: | chr20:22850661-22850890 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 66-303 |
| Cow position: | chr20:25293112-25293346 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 69 |
| Conread position: | 66-304 |
| Cow position: | chr20:14583128-14582885 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 68 |
| Conread position: | 67-293 |
| Cow position: | chr20:5668959-5668729 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 69-301 |
| Cow position: | chr20:4672476-4672712 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-327 |
| Cow position: | chr20:34107508-34107773 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-447 |
| Cow position: | chr20:6423523-6423883 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 69-451 |
| Cow position: | chr20:10538871-10539245 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-470 |
| Cow position: | chr20:25844518-25844116 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-470 |
| Cow position: | chr20:30689661-30690060 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-470 |
| Cow position: | chr20:35036478-35036076 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-486 |
| Cow position: | chr20:9014799-9014378 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 69-486 |
| Cow position: | chr20:18490737-18491153 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 62 |
| Conread position: | 69-487 |
| Cow position: | chr20:4788685-4788263 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 69-488 |
| Cow position: | chr20:8577797-8578217 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 69-488 |
| Cow position: | chr20:9433161-9433555 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 69-488 |
| Cow position: | chr20:10913785-10913363 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 69-488 |
| Cow position: | chr20:20353365-20352945 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 69-488 |
| Cow position: | chr20:22446088-22445668 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-488 |
| Cow position: | chr20:23871271-23870847 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 69-488 |
| Cow position: | chr20:26076631-26077050 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 70-270 |
| Cow position: | chr20:22007007-22007206 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 67 |
| Conread position: | 70-292 |
| Cow position: | chr20:21398592-21398813 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 70-448 |
| Cow position: | chr20:3388990-3388620 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 93, 67 |
| Conread position: | 70-451 |
| Cow position: | chr20:33540429-33540810 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 70-488 |
| Cow position: | chr20:9267576-9267136 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 93, 70 |
| Conread position: | 70-488 |
| Cow position: | chr20:19146419-19146844 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 76-286 |
| Cow position: | chr20:12421080-12420872 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 76-475 |
| Cow position: | chr20:19352210-19351808 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 76-485 |
| Cow position: | chr20:21767833-21767424 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 76-488 |
| Cow position: | chr20:4895343-4894919 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 78-451 |
| Cow position: | chr20:774671-774298 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-451 |
| Cow position: | chr20:9659726-9660078 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-451 |
| Cow position: | chr20:20778980-20778621 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 78-457 |
| Cow position: | chr20:7757067-7756695 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 78-464 |
| Cow position: | chr20:20732042-20732426 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 66, 93 |
| Conread position: | 78-487 |
| Cow position: | chr20:26881372-26880941 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 79-470 |
| Cow position: | chr20:14756509-14756120 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 87-350 |
| Cow position: | chr20:17820636-17820373 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 102-475 |
| Cow position: | chr20:34001807-34001449 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 140-451 |
| Cow position: | chr20:29979647-29979962 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 201 |
| Conread position: | 175-400 |
| Cow position: | chr20:2907225-2906999 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 12, 141 |
Show alignments to all cow chromosomes.