Cow genome map
| Conread name: | rsin05_g3.y1 |
| Conread position: | 1-283 |
| Cow position: | chr21:29785630-29785935 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 149 |
| Conread position: | 1-314 |
| Cow position: | chr21:446541-446872 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 1-392 |
| Cow position: | chr21:2420007-2420398 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 1-400 |
| Cow position: | chr21:14462270-14461868 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 61-393 |
| Cow position: | chr21:19882353-19882012 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 61-482 |
| Cow position: | chr21:12365949-12366370 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 61-486 |
| Cow position: | chr21:47823710-47823288 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 61-488 |
| Cow position: | chr21:37322733-37322312 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 62-340 |
| Cow position: | chr21:4585785-4585510 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 63-451 |
| Cow position: | chr21:26744394-26743988 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 63-488 |
| Cow position: | chr21:3236092-3236512 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 67-442 |
| Cow position: | chr21:6297521-6297901 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 102, 69 |
| Conread position: | 67-480 |
| Cow position: | chr21:31975041-31975460 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 69-296 |
| Cow position: | chr21:25799935-25800166 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 69-302 |
| Cow position: | chr21:6051047-6051287 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 69-304 |
| Cow position: | chr21:1058370-1058612 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 69-307 |
| Cow position: | chr21:31881-32117 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-307 |
| Cow position: | chr21:46132426-46132192 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-316 |
| Cow position: | chr21:32560068-32559821 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 69-349 |
| Cow position: | chr21:19237288-19237567 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 69-365 |
| Cow position: | chr21:44657888-44658184 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-433 |
| Cow position: | chr21:684058-684415 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-449 |
| Cow position: | chr21:29253317-29252940 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-451 |
| Cow position: | chr21:4279205-4279585 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 69-451 |
| Cow position: | chr21:14762944-14762554 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 69-455 |
| Cow position: | chr21:15742533-15742146 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 69-458 |
| Cow position: | chr21:22140772-22140383 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 69-466 |
| Cow position: | chr21:16292986-16293407 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 69-470 |
| Cow position: | chr21:27607793-27607390 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 69-487 |
| Cow position: | chr21:33420146-33419732 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 70 |
| Conread position: | 69-488 |
| Cow position: | chr21:23683112-23683538 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 69-488 |
| Cow position: | chr21:28210756-28211187 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 70-438 |
| Cow position: | chr21:12465922-12466291 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 102, 73 |
| Conread position: | 70-450 |
| Cow position: | chr21:1803182-1802802 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 129, 65 |
| Conread position: | 73-447 |
| Cow position: | chr21:11195708-11196081 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 108, 64 |
| Conread position: | 76-286 |
| Cow position: | chr21:19436825-19436611 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 76-292 |
| Cow position: | chr21:2810535-2810321 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 144, 59 |
| Conread position: | 76-311 |
| Cow position: | chr21:297301-297531 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 76-314 |
| Cow position: | chr21:49662843-49662602 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 76-316 |
| Cow position: | chr21:22464367-22464607 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 129, 61 |
| Conread position: | 76-433 |
| Cow position: | chr21:36626652-36626301 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 76-451 |
| Cow position: | chr21:9711137-9710756 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 76-465 |
| Cow position: | chr21:20549344-20548949 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 109 |
| Conread position: | 76-466 |
| Cow position: | chr21:36657147-36657535 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 200 |
| Conread position: | 76-486 |
| Cow position: | chr21:3813889-3813492 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 61 |
| Conread position: | 76-488 |
| Cow position: | chr21:23192941-23192524 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 48 |
| Conread position: | 76-488 |
| Cow position: | chr21:24698055-24698470 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 76-488 |
| Cow position: | chr21:30250627-30250206 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 61 |
| Conread position: | 76-488 |
| Cow position: | chr21:30849359-30848958 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 219, 61 |
| Conread position: | 77-458 |
| Cow position: | chr21:44331712-44331329 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 78-304 |
| Cow position: | chr21:23283253-23283028 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 57 |
| Conread position: | 78-342 |
| Cow position: | chr21:44281253-44280988 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 78-347 |
| Cow position: | chr21:14727636-14727896 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 78-451 |
| Cow position: | chr21:22855802-22856167 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 78-453 |
| Cow position: | chr21:36399306-36399673 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 78-454 |
| Cow position: | chr21:26681358-26680993 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 145, 59 |
| Conread position: | 78-456 |
| Cow position: | chr21:34658618-34658985 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 109, 55 |
| Conread position: | 78-458 |
| Cow position: | chr21:43240444-43240818 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 28 |
| Conread position: | 78-488 |
| Cow position: | chr21:2904883-2904485 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 79-466 |
| Cow position: | chr21:41957602-41957212 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 79-488 |
| Cow position: | chr21:46912124-46912530 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 111, 58 |
| Conread position: | 80-451 |
| Cow position: | chr21:28477207-28477572 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 81-382 |
| Cow position: | chr21:9981105-9980817 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 83-455 |
| Cow position: | chr21:15545777-15545416 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 85-439 |
| Cow position: | chr21:23658127-23658485 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 87-314 |
| Cow position: | chr21:31040850-31040622 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 87-315 |
| Cow position: | chr21:9218524-9218742 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 94-416 |
| Cow position: | chr21:48262726-48263049 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 102-488 |
| Cow position: | chr21:40244038-40244430 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 35 |
| Conread position: | 115-487 |
| Cow position: | chr21:8290026-8289647 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 128-488 |
| Cow position: | chr21:37479585-37479949 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 99, 159 |
| Conread position: | 170-485 |
| Cow position: | chr21:24887664-24887998 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 170-488 |
| Cow position: | chr21:23449249-23449565 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 124 |
| Conread position: | 179-456 |
| Cow position: | chr21:641264-641537 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 197 |
| Conread position: | 298-488 |
| Cow position: | chr21:28944567-28944375 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 299-477 |
| Cow position: | chr21:24758869-24759048 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 34, 54 |
Show alignments to all cow chromosomes.