Cow genome map

Conread name: rsin05_g3.y1

Conread position: 1-285
Cow position: chr22:11489980-11490285 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 120

Conread position: 1-293
Cow position: chr22:9465955-9466265 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 146

Conread position: 1-304
Cow position: chr22:4650477-4650800 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 166

Conread position: 1-317
Cow position: chr22:23582172-23581834 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 120

Conread position: 1-383
Cow position: chr22:7280397-7280808 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 279
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 23, 121

Conread position: 1-418
Cow position: chr22:9685444-9685873 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 117

Conread position: 1-451
Cow position: chr22:5929267-5928809 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 324
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 31, 147

Conread position: 1-451
Cow position: chr22:27306323-27305865 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 307
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 68

Conread position: 1-470
Cow position: chr22:845-1330 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 160

Conread position: 1-485
Cow position: chr22:22155019-22155522 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 152

Conread position: 1-488
Cow position: chr22:42605050-42605553 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 120

Conread position: 3-303
Cow position: chr22:26321850-26322181 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 29, 153

Conread position: 3-316
Cow position: chr22:17853490-17853166 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 143

Conread position: 3-459
Cow position: chr22:33200915-33201380 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 154

Conread position: 3-481
Cow position: chr22:5262889-5262410 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 117

Conread position: 4-487
Cow position: chr22:42934074-42933558 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 152

Conread position: 8-359
Cow position: chr22:19041206-19040827 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 24, 143

Conread position: 14-451
Cow position: chr22:19591837-19592300 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 103

Conread position: 57-347
Cow position: chr22:1727315-1727606 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 46

Conread position: 57-488
Cow position: chr22:8303359-8302929 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 294
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 236

Conread position: 62-312
Cow position: chr22:26785632-26785887 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 7, 43

Conread position: 63-488
Cow position: chr22:26106553-26106981 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 40

Conread position: 66-454
Cow position: chr22:18021516-18021136 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 262
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 67

Conread position: 67-448
Cow position: chr22:16000989-16001368 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 242
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 87

Conread position: 67-453
Cow position: chr22:42388714-42389108 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 34, 39

Conread position: 68-458
Cow position: chr22:39936218-39935822 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 95, 65

Conread position: 69-303
Cow position: chr22:29575355-29575114 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 8, 69

Conread position: 69-402
Cow position: chr22:43261588-43261926 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 64

Conread position: 69-466
Cow position: chr22:865004-864620 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 8, 70

Conread position: 69-466
Cow position: chr22:32892203-32892596 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-470
Cow position: chr22:34172177-34172581 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 34

Conread position: 69-483
Cow position: chr22:31497607-31497181 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 69

Conread position: 69-486
Cow position: chr22:2070471-2070894 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 127

Conread position: 69-486
Cow position: chr22:21011896-21012309 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 72

Conread position: 69-488
Cow position: chr22:7302347-7301910 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 38

Conread position: 69-488
Cow position: chr22:10294561-10294960 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 281
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 74

Conread position: 69-488
Cow position: chr22:21502240-21502666 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 32

Conread position: 69-488
Cow position: chr22:43292410-43291973 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 70-397
Cow position: chr22:17922872-17922542 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 67

Conread position: 70-453
Cow position: chr22:9148720-9149113 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 259
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 50, 66

Conread position: 70-454
Cow position: chr22:43384647-43384256 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 260
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 31

Conread position: 70-484
Cow position: chr22:21567506-21567916 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 292
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 7, 66

Conread position: 70-488
Cow position: chr22:30689134-30689558 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 70-488
Cow position: chr22:41971650-41971237 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 7, 67

Conread position: 76-316
Cow position: chr22:10323221-10323460 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 143, 59

Conread position: 76-358
Cow position: chr22:46439596-46439313 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 65

Conread position: 76-400
Cow position: chr22:32951972-32952313 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 87, 61

Conread position: 76-413
Cow position: chr22:10415426-10415763 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 148, 59

Conread position: 76-439
Cow position: chr22:33409370-33409002 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 231
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 308

Conread position: 76-459
Cow position: chr22:36583118-36582741 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 26

Conread position: 76-460
Cow position: chr22:37730405-37730803 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 93, 59

Conread position: 76-466
Cow position: chr22:1342256-1342632 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 144, 11

Conread position: 76-466
Cow position: chr22:8357125-8357511 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 61

Conread position: 76-466
Cow position: chr22:8481167-8481540 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 144, 61

Conread position: 76-466
Cow position: chr22:22160228-22160621 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 58

Conread position: 76-485
Cow position: chr22:39633189-39633603 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 272
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 87, 61

Conread position: 76-486
Cow position: chr22:6721559-6721156 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 274
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 73, 87

Conread position: 76-487
Cow position: chr22:5467857-5467445 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 276
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 121, 61

Conread position: 76-488
Cow position: chr22:11489054-11489456 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 290
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 105, 61

Conread position: 76-488
Cow position: chr22:15759874-15760291 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 278
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 192, 59

Conread position: 76-488
Cow position: chr22:26081385-26080970 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 25

Conread position: 76-488
Cow position: chr22:32153247-32152833 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 93, 57

Conread position: 76-488
Cow position: chr22:39695822-39696214 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 143, 61

Conread position: 77-486
Cow position: chr22:10685566-10685167 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 66

Conread position: 78-291
Cow position: chr22:5015816-5016029 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 63

Conread position: 78-300
Cow position: chr22:982274-982495 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 142, 59

Conread position: 78-314
Cow position: chr22:7303758-7303523 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 32, 24

Conread position: 78-400
Cow position: chr22:39033083-39033403 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 25, 31

Conread position: 78-426
Cow position: chr22:38959867-38959514 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 246
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 24

Conread position: 78-448
Cow position: chr22:6756795-6756426 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr22:10596266-10596639 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-451
Cow position: chr22:10906469-10906096 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 78-470
Cow position: chr22:5930595-5930203 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 59

Conread position: 78-470
Cow position: chr22:13721023-13720622 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 62

Conread position: 78-488
Cow position: chr22:1484375-1484783 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 23

Conread position: 78-488
Cow position: chr22:43743791-43743412 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 280
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 105, 63

Conread position: 79-435
Cow position: chr22:26070137-26070510 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 276
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 84, 55

Conread position: 79-470
Cow position: chr22:25206458-25206064 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 61

Conread position: 79-488
Cow position: chr22:11612942-11613348 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 58

Conread position: 79-488
Cow position: chr22:13017267-13016872 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 23

Conread position: 79-488
Cow position: chr22:30483434-30483840 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 279
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 139, 56

Conread position: 79-488
Cow position: chr22:38439638-38439233 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 58

Conread position: 82-451
Cow position: chr22:37842939-37842574 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 244
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 51

Conread position: 82-477
Cow position: chr22:33986245-33985854 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 42

Conread position: 83-445
Cow position: chr22:41170639-41171004 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 238
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 87, 50

Conread position: 85-451
Cow position: chr22:25201915-25202271 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 242
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 78, 52

Conread position: 86-419
Cow position: chr22:38949393-38949063 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 222
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 133, 49

Conread position: 88-481
Cow position: chr22:41927839-41927434 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 89-448
Cow position: chr22:18335295-18334946 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 242
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 80, 46

Conread position: 103-393
Cow position: chr22:8634913-8634626 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 17

Conread position: 140-466
Cow position: chr22:16236079-16235752 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 47, 36

Conread position: 171-470
Cow position: chr22:42946464-42946155 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 48, 154

Conread position: 174-486
Cow position: chr22:23010328-23010018 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 138

Conread position: 179-417
Cow position: chr22:21407414-21407655 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 81

Conread position: 327-477
Cow position: chr22:25714772-25714918 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.